Factsheet for Solyc05g016230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g041980.1.1	Tomato	mitochondrion	48.78	89.02
Solyc09g066080.1.1	Tomato	cytosol	45.88	84.43
Solyc09g066090.2.1	Tomato	nucleus	35.41	72.94
Solyc12g042000.1.1	Tomato	nucleus	24.94	54.11
VIT_07s0005g03940.t01	Wine grape	plastid	42.98	46.06
Solyc06g008210.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	59.47	38.03
KRG95712	Soybean	nucleus	47.66	31.7
KRH67433	Soybean	nucleus	47.22	31.27
CDY68257	Canola	mitochondrion, plastid	16.04	30.9
Os04t0512400-01	Rice	cytosol	42.32	30.21
TraesCS2A01G384900.1	Wheat	nucleus	39.42	28.69
HORVU2Hr1G088840.1	Barley	nucleus	39.42	28.46
CDY10084	Canola	vacuole	44.1	28.41
TraesCS2B01G401900.1	Wheat	nucleus, plasma membrane, vacuole	35.63	28.02
GSMUA_Achr8P13610_001	Banana	cytosol	34.08	27.97
EES12490	Sorghum	cytosol, nucleus, plasma membrane	38.75	27.93
TraesCS2D01G381600.1	Wheat	cytosol, nucleus, plasma membrane	38.98	27.78
AT1G04020.1	Thale cress	nucleus	43.88	27.63
Zm00001d003040_P001	Maize	extracellular, nucleus, vacuole	39.42	27.19
GSMUA_Achr8P12560_001	Banana	nucleus	38.53	27.16
OQU85242	Sorghum	nucleus	24.94	26.73
HORVU2Hr1G088910.1	Barley	plastid	21.38	25.07
Zm00001d017078_P002	Maize	cytosol	27.84	23.67
Os05t0486600-01	Rice	mitochondrion	28.73	23.12
TraesCS1B01G315000.1	Wheat	nucleus	24.94	22.36
TraesCS1D01G304000.1	Wheat	nucleus	25.17	21.61
KXG22233	Sorghum	nucleus	28.73	18.75
TraesCS2A01G139100.2	Wheat	mitochondrion, plastid	26.5	18.09
TraesCS2B01G163200.1	Wheat	golgi, plasma membrane	26.73	18.07
HORVU1Hr1G069020.11	Barley	plastid	28.06	18.03
TraesCS2D01G142000.2	Wheat	mitochondrion, plastid	26.28	17.99
Bra032532.1-P	Field mustard	nucleus	44.77	17.8
HORVU0Hr1G002630.3	Barley	mitochondrion	26.28	17.61
TraesCS1D01G304600.1	Wheat	nucleus, plastid	29.18	17.06
TraesCS1B01G315300.1	Wheat	plastid	28.51	16.64
CDY32524	Canola	cytosol	40.31	16.54
TraesCS1A01G304700.1	Wheat	nucleus	29.18	16.11
Solyc08g023280.2.1	Tomato	nucleus	35.63	16.03

Protein Annotations

MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
ncoils:Coil	InterPro:EPHD	GO:GO:0000724	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005886
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006629	GO:GO:0006950
GO:GO:0006974	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031436
GO:GO:0035066	GO:GO:0035067	GO:GO:0042127	GO:GO:0045717	GO:GO:0045944	GO:GO:0046872
GO:GO:0070531	GO:GO:0071158	InterPro:IPR001357	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420
UniProt:K4BYY7	PFAM:PF00533	PFAM:PF13771	PFAM:PF16589	PFscan:PS50172	PFscan:PS51805
PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00249	SMART:SM00292	SUPFAM:SSF52113	EnsemblPlantsGene:Solyc05g016230.2
EnsemblPlants:Solyc05g016230.2.1	UniParc:UPI0002766E40	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	:	:

Description

No Description!

Coordinates

chr5:+:15163373..15172656

Molecular Weight (calculated)

49984.2 Da

IEP (calculated)

6.749

GRAVY (calculated)

-0.198

Length

449 amino acids

Sequence
(BLAST)

001: MDIKQQKKLN SGLSEMSLES HDHILQRCPS SEIVADSNCN LEYKICESPN VVQPKAVIDQ HPPKASVCAF CYSAKTTEKT GPFLYFANGR EVVGNVTSLS
101: KVICVHSKCI EWTPQVYYEG EIIKNLDTEL ARATKLKCSS CGMKGAALGC YMTSCRRSYH VPCAFEIQDC QWDMENYVML CPVHKSVKFP SEKSKSIEHI
201: KREMHPKASP LTTEQLTFWA RSSDGPKEWV LCGSALSSED KYMLVKFAGM CGATVCKFWK PNVTHVVATT DVKGACTRTM KVLMAILSGK WIVTMDWVKA
301: CVAANGPVNE ELYEISLDNY GRSGGPKAGR LMASTNGPKL FDGFEFYFIG DFMPDYKSDL LDLVEKAGGT VIHSEEQLVK QNHAAQETQP SSLVVYNCDL
401: SQGCFEEKIR ILLQRLAEAE DLAEQMGSQT VQHTWILESI AACKLVPFC

Best Arabidopsis Sequence Match ( AT1G04020.1 )
(BLAST)

001: MAEFTNMLMN PWVLHLQKLE LELKCPLCLK LLNRPVLLPC DHVFCDSCVH KSSQVESGCP VCKSKHPKKA RRDLRFMESV ISIYKSLNAA VSVHLPQLQI
101: PNDCNYKNDA LNNSNSPKHG ESEDSEMTDK DVSKRSGGTD SSSRDGSPLP TSEESDPRPK HQDWTEKQLS DHLLLYEFES EYDAANHTPE SYTEQAAKNV
201: RDITASEQPS NAARKRICGD SFIQESSPNP KTQDPTLLRL MESLRSDDPT DYVKAQNHQL PKSHTEQDSK RKRDITASDA MENHLKVPKR ENNLMQKSAD
301: IDCNGKCSAN SDDQLSEKIS KALEQTSSNI TICGFCQSAR VSEATGEMLH YSRGRPVDGD DIFRSNVIHV HSACIEWAPQ VYYEGDTVKN LKAELARGMK
401: IKCTKCSLKG AALGCFVKSC RRSYHVPCAR EISRCRWDYE DFLLLCPAHS SVKFPNEKSG HRVSRAEPLP KINPAELCSL EQTPAFTKEL VLCGSALSKS
501: DKKLMESLAV RFNATISRYW NPSVTHVIAS TDEKGACTRT LKVLMGILNG KWIINAAWMK ASLKASQPVD EEPFEIQIDT QGCQDGPKTA RLRAETNKPK
601: LFEGLKFYFF GDFYKGYKED LQNLVKVAGG TILNTEDELG AESSNNVNDQ RSSSIVVYNI DPPHGCALGE EVTIIWQRAN DAEALASQTG SRLVGHTWVL
701: ESIAGYKLHP VIG

Arabidopsis Description

ATBARD1Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.