Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g081170.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G21070.1 | Solyc02g081170.2.1 | AT4G04020.1 | 16957774 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013749 | Potato | nucleus | 92.99 | 87.8 |
| Bra037622.1-P | Field mustard | nucleus | 3.11 | 56.36 |
| HORVU4Hr1G010810.1 | Barley | cytosol | 2.3 | 48.94 |
| CDX76414 | Canola | nucleus | 35.47 | 39.51 |
| Bra020883.1-P | Field mustard | nucleus | 35.27 | 39.2 |
| Solyc09g066080.1.1 | Tomato | cytosol | 9.42 | 38.52 |
| CDY57063 | Canola | nucleus | 34.77 | 37.68 |
| CDX82797 | Canola | nucleus | 33.97 | 37.62 |
| AT4G21070.1 | Thale cress | nucleus | 35.27 | 37.41 |
| CDX79031 | Canola | nucleus | 34.57 | 37.18 |
| Solyc12g041980.1.1 | Tomato | mitochondrion | 9.02 | 36.59 |
| Solyc09g066090.2.1 | Tomato | nucleus | 7.82 | 35.78 |
| Solyc05g016230.2.1 | Tomato | nucleus | 16.03 | 35.63 |
| GSMUA_Achr6P29980_001 | Banana | nucleus | 33.27 | 33.88 |
| Os05t0512000-01 | Rice | extracellular | 33.47 | 33.84 |
| TraesCS1A01G329600.1 | Wheat | nucleus | 33.57 | 33.8 |
| EES18483 | Sorghum | nucleus | 33.47 | 33.53 |
| HORVU1Hr1G077590.4 | Barley | plastid | 33.57 | 33.14 |
| TraesCS1B01G343100.2 | Wheat | nucleus | 32.46 | 32.37 |
| TraesCS1D01G331700.1 | Wheat | nucleus | 31.06 | 32.22 |
| Zm00001d038667_P001 | Maize | nucleus | 29.16 | 31.66 |
| Solyc12g042000.1.1 | Tomato | nucleus | 6.51 | 31.4 |
| Solyc06g008210.2.1 | Tomato | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 21.04 | 29.91 |
| KRH11144 | Soybean | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 39.18 | 27.38 |
Protein Annotations
Description
No Description!
Coordinates
chr8:+:29087926..29094335
Molecular Weight (calculated)
110453.0 Da
IEP (calculated)
8.809
GRAVY (calculated)
-0.549
Length
998 amino acids
Sequence
(BLAST)
(BLAST)
001: MADISHLERM GRELKCPICL SLFNSAVSLT CNHVFCNLCI QTGMKSGSNC PVCKVPFHRR EIRPALHMDN LVSIYKNMEI ASGVNMFLTQ SNPSTKLPGE
101: NTRSNGEKVC GFQETPKTVT EAPATDNQKR KRGKGSKRSS GCNKKISGSN LIRPSFPTKK RVQVPQYPPS ETPPPTKLVD GNGKSITDEV QKPLVIERDR
201: SMLNEKGEPV LSPFFWLREE DVDKSSQQTD GDVIMDTPPA FPSFSDMKDL DDEVHCEMTP KSGPYDAANG ADLFDSEMFD WTQRACSPEL CSSPFKMKLK
301: DTIDSAEAQE KTQAHSVEES DINASATENR TAVENEKGTD KGQLSSPAIF SPVNKTTSRK DVVCKSSRSK SLRSSQKKQG KNIIGELSEV HDASLKAAEN
401: TMKNNQDNAN AFISNKKDSK NKKKGRSSRN VTESVVEDIS TSCGAKRLRK GNNSKSFNLS TIVNQEKHSE GSVETLDLKT HNIFRKGSLR EQAKNCFGPK
501: GGKKTAVCNI PQIQDEALPF ESANRLIPMD NKKPTRSTKL KKCELGSDNK LHGKKKVKFS DDGQLADKDN ITLQKIQKRV LNSLETDKSV LNSNDSVLQK
601: CEASQSKIQC AFCRSAEISE VSGIMVSYLN GNPVKEDVNG APGVIHVHKY CAEWAPNVYF GDDDVVNLES ELKRSRRITC FFCGVKGAAL GCYEMSCRKS
701: FHVPCAKLTP ECRWDSDNFV MLCPLHANSK LPSEIPGKQT KIGDSIKRNS RIHQPNVSAT PDNGATLQWK SQKKNKNLVL CCSALTADEK ELVSKLKRLS
801: GVTVVKNWDL SVTHVIASTD EKGACRRTLK YLMGVLAGKW IMSINWIIAS LEATEYVDEQ QYEIKIDTHG IVDGPKLGRL RILNKQPKLF NGYKFFFMGD
901: FLSSYKSYLH DLVIAAGGIV LNRKPIALDQ EILSPGCPLL FVIYSHEQLD QCEGSEKISI IARRRSNAEV LASSTGAVAA SHSWILNCIA GSRLLELE
101: NTRSNGEKVC GFQETPKTVT EAPATDNQKR KRGKGSKRSS GCNKKISGSN LIRPSFPTKK RVQVPQYPPS ETPPPTKLVD GNGKSITDEV QKPLVIERDR
201: SMLNEKGEPV LSPFFWLREE DVDKSSQQTD GDVIMDTPPA FPSFSDMKDL DDEVHCEMTP KSGPYDAANG ADLFDSEMFD WTQRACSPEL CSSPFKMKLK
301: DTIDSAEAQE KTQAHSVEES DINASATENR TAVENEKGTD KGQLSSPAIF SPVNKTTSRK DVVCKSSRSK SLRSSQKKQG KNIIGELSEV HDASLKAAEN
401: TMKNNQDNAN AFISNKKDSK NKKKGRSSRN VTESVVEDIS TSCGAKRLRK GNNSKSFNLS TIVNQEKHSE GSVETLDLKT HNIFRKGSLR EQAKNCFGPK
501: GGKKTAVCNI PQIQDEALPF ESANRLIPMD NKKPTRSTKL KKCELGSDNK LHGKKKVKFS DDGQLADKDN ITLQKIQKRV LNSLETDKSV LNSNDSVLQK
601: CEASQSKIQC AFCRSAEISE VSGIMVSYLN GNPVKEDVNG APGVIHVHKY CAEWAPNVYF GDDDVVNLES ELKRSRRITC FFCGVKGAAL GCYEMSCRKS
701: FHVPCAKLTP ECRWDSDNFV MLCPLHANSK LPSEIPGKQT KIGDSIKRNS RIHQPNVSAT PDNGATLQWK SQKKNKNLVL CCSALTADEK ELVSKLKRLS
801: GVTVVKNWDL SVTHVIASTD EKGACRRTLK YLMGVLAGKW IMSINWIIAS LEATEYVDEQ QYEIKIDTHG IVDGPKLGRL RILNKQPKLF NGYKFFFMGD
901: FLSSYKSYLH DLVIAAGGIV LNRKPIALDQ EILSPGCPLL FVIYSHEQLD QCEGSEKISI IARRRSNAEV LASSTGAVAA SHSWILNCIA GSRLLELE
001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
Arabidopsis Description
BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.