CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90850
CDX94540
CDY16684
CDY21291
CDY71809

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21070.1	CDX90850	AT4G04020.1	16957774
AT4G21070.1	CDX94540	AT4G04020.1	16957774
AT4G21070.1	CDY16684	AT4G04020.1	16957774
AT4G21070.1	CDY21291	AT4G04020.1	16957774
AT4G21070.1	CDY71809	AT4G04020.1	16957774

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020883.1-P	Field mustard	nucleus	91.18	90.98
CDY57063	Canola	nucleus	86.38	84.04
CDX82797	Canola	nucleus	66.07	65.7
CDX79031	Canola	nucleus	65.96	63.69
AT4G21070.1	Thale cress	nucleus	62.5	59.51
HORVU4Hr1G010810.1	Barley	cytosol	2.79	53.19
Solyc08g023280.2.1	Tomato	nucleus	39.51	35.47
PGSC0003DMT400013749	Potato	nucleus	39.73	33.68
TraesCS1A01G329600.1	Wheat	nucleus	36.61	33.1
Os05t0512000-01	Rice	extracellular	36.05	32.73
TraesCS1D01G331700.1	Wheat	nucleus	34.82	32.43
TraesCS1B01G343100.2	Wheat	nucleus	36.05	32.27
HORVU1Hr1G077590.4	Barley	plastid	36.27	32.15
EES18483	Sorghum	nucleus	35.71	32.13
CDY10084	Canola	vacuole	24.78	31.85
Zm00001d038667_P001	Maize	nucleus	31.92	31.12
GSMUA_Achr6P29980_001	Banana	nucleus	33.93	31.02
CDY68257	Canola	mitochondrion, plastid	6.58	25.32
KRH11144	Soybean	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	38.73	24.3
CDY32524	Canola	cytosol	23.44	19.2

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:14.3.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.10190
GO:A0A078CK22	InterPro:BRCA1-associated	InterPro:BRCT_dom	InterPro:BRCT_dom_sf	EnsemblPlants:CDX76414	ProteinID:CDX76414
ProteinID:CDX76414.1	InterPro:EPHD	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00126818001	InterPro:IPR001357
InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR034732	InterPro:IPR036420	PFAM:PF00533	PFAM:PF13771
PFAM:PF13923	PFAM:PF16589	PIRSF:PIRSF001734	ScanProsite:PS00518	PFscan:PS50089	PFscan:PS50172
PFscan:PS51805	PANTHER:PTHR13763	PANTHER:PTHR13763:SF1	SMART:SM00184	SMART:SM00292	SUPFAM:SSF52113
SUPFAM:SSF57850	UniParc:UPI0004EE7E15	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

BnaA08g09860D

Coordinates

chrLK031807:+:1027141..1031878

Molecular Weight (calculated)

98309.5 Da

IEP (calculated)

9.138

GRAVY (calculated)

-0.719

Length

896 amino acids

Sequence
(BLAST)

001: MGDDGATHLE KMGRELKCPI CLSLFNSAVS LTCNHVFCNA CIVKSMKVDA TCPVCKVPFH RREIRGAPHM DSLVSIYKNM EVASGVPMFV SQTKPSSPSE
101: KQKHVGDGSI EKENGKKRQG SSKGRTSKKR GSRKTKETDV DSSGPIVMKP SSQTNKRVQL SQNHSSQSLT ISTESAEKLK DYTDRTVIRL NEHPSLDKEE
201: NLAPLFWLRD EVDGESLSQP TESDQLLDVT PVDVPSFSDL KDSDHDTPSK AVEQEKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKDLG KGEIDLPQRK
301: LSKDASSNKK RKAGSARNKV VNVRVGVSKE DHIASSAGEN IGEKQETGGT SGKSTRRDGN VKAKRATRNK GQTSGVQSGS VEAEGKQGTK KKRSSVKVSA
401: EQPVAVSNEL SVGTENVGKG DQEPEKQSPA EKPSLKKRRK SQTGDLSGRS EKKTSEKRSK LDSCATPSRV TQSRGKKILS DELNQAGDRQ DSTNKKPSLG
501: GSVHLRRCSG PPTNKFTCAF CQSSDETEAS GKMAHYHKGD PVSANFSGGS NVVIHVHKNC AEWAPNVYFN RRTAVNLDVE LTRSRRITCT CCGLKGAALG
601: CYNESCKNSF HVTCAKLIPE CRWDDKNFVM LCPLDASSKL PCEEASPKGR KRKRAPEGPL QAQANQVSEK SDISELQRKP FHGLPKKMVL CCSGLTDEEN
701: SVISEFAELS GVTVSRKWER RVTHVIASIN ENGACKRTLK FMMGILEGKW ILSIDWIKAC MKNGECVSEE PYEISIDVHG TRQGPYIGRQ RALNKEPKLF
801: NGLKFYMMGD FELAYKGYLQ DMIVAAGGTI LCRRPVCNDD NEASTIVVFN TEPSKKKTLT ERRSDAEALA RSVNARAASS SWVLDSIAGC QALDLM

Best Arabidopsis Sequence Match ( AT4G21070.1 )
(BLAST)

001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I

Arabidopsis Description

BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.