Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G21070.1 | CDX90850 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDX94540 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDY16684 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDY21291 | AT4G04020.1 | 16957774 |
| AT4G21070.1 | CDY71809 | AT4G04020.1 | 16957774 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79031 | Canola | nucleus | 84.57 | 82.11 |
| Bra037622.1-P | Field mustard | nucleus | 4.99 | 81.82 |
| CDY57063 | Canola | nucleus | 68.59 | 67.1 |
| CDX76414 | Canola | nucleus | 65.7 | 66.07 |
| AT4G21070.1 | Thale cress | nucleus | 65.26 | 62.49 |
| HORVU4Hr1G010810.1 | Barley | cytosol | 2.77 | 53.19 |
| Solyc08g023280.2.1 | Tomato | nucleus | 37.62 | 33.97 |
| TraesCS1A01G329600.1 | Wheat | nucleus | 36.18 | 32.9 |
| Os05t0512000-01 | Rice | extracellular | 35.85 | 32.73 |
| EES18483 | Sorghum | nucleus | 35.85 | 32.43 |
| TraesCS1D01G331700.1 | Wheat | nucleus | 34.52 | 32.33 |
| GSMUA_Achr6P29980_001 | Banana | nucleus | 35.07 | 32.24 |
| PGSC0003DMT400013749 | Potato | nucleus | 37.51 | 31.98 |
| TraesCS1B01G343100.2 | Wheat | nucleus | 35.52 | 31.97 |
| CDY10084 | Canola | vacuole | 24.2 | 31.28 |
| HORVU1Hr1G077590.4 | Barley | plastid | 34.63 | 30.86 |
| Zm00001d038667_P001 | Maize | nucleus | 30.97 | 30.36 |
| CDY68257 | Canola | mitochondrion, plastid | 6.33 | 24.46 |
| KRH11144 | Soybean | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 37.96 | 23.95 |
| CDY32524 | Canola | cytosol | 22.53 | 18.56 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:14.3.1.1 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10190 |
| GO:A0A078D0Z6 | InterPro:BRCA1-associated | InterPro:BRCT_dom | InterPro:BRCT_dom_sf | EnsemblPlants:CDX82797 | ProteinID:CDX82797 |
| ProteinID:CDX82797.1 | ncoils:Coil | InterPro:EPHD | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00138130001 |
| InterPro:IPR001357 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR034732 | InterPro:IPR036420 | PFAM:PF00533 |
| PFAM:PF13771 | PFAM:PF13923 | PFAM:PF16589 | PIRSF:PIRSF001734 | ScanProsite:PS00518 | PFscan:PS50089 |
| PFscan:PS50172 | PFscan:PS51805 | PANTHER:PTHR13763 | PANTHER:PTHR13763:SF1 | SMART:SM00184 | SMART:SM00249 |
| SMART:SM00292 | SUPFAM:SSF52113 | SUPFAM:SSF57850 | UniParc:UPI0004EE56AD | InterPro:Znf_PHD | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
BnaC01g12470D
Coordinates
chrLK031830:+:381867..386034
Molecular Weight (calculated)
99553.4 Da
IEP (calculated)
8.621
GRAVY (calculated)
-0.735
Length
901 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDVSHLEKM GRELKCPICL SLFDSAASLS CNHVFCNGCI VKSMKVDATC PVCKIPFHRR EIRGAPHMDS LVSIYKNMED ASGVHMFVSL NIPSPSEKEK
101: HVGDASIEKA NDKKHQGSSK SRISKKRGFT KNKEKDLDPP GPIVMKPSSQ TKKRVQLLQN QSSENSTESV ESAEKLKDST EETVIRLNEH TSLNKEENMA
201: PFFWLRDEND EENLSQPAES DPFLDVTPVD VPSFSDLKDS DHDSPSKAVE QERPNPKDMF DSEMFEWTQR PSSPEILPSP VKAKALGKDA TQMNLPKGAS
301: SNKKRKAGTA RNTVAKRLDG VSKEDYVEPS LGASISEKQE TGGTSGTSTR KDENVKAKRA TRNKGQTSRV QAGVNTHVEA EAKQGTKRKR SSVKVSPDPP
401: VAESNELSLG TEDVGKGDQE LTHGSAGTQP TEKYSLRKRR KSSASSFPKY SSATQPRGKK ILSEELNQVE DRQDLTNQKK PSVDNGTHTM QVSEKSSTMN
501: KPSLGDNALL RRCDGPPINK STCAFCQSSE DTEASGEMAH YHRGEPVSAD FSGGSKVIHA HKNCAEWAPN VYFNNLTAVN LDAELTRSRR ITCSSCGLKG
601: AALGCYNASC KSSFHVTCAK LIPECRWDNE NFVMLCPSDA SSKLPCEETS PKERKRKRTP PKRPQHSQPN QVSEKPDISE LQSKPFHGVS KKLVLCCSGL
701: TDEEKSVISE FAEVSGVTIS RKWEPRVTHI IASINDNGAC KRTLKFMMGV LEGKWILSID WIKACMNNRE YVTEEPYEIS TDVHGTRQGP YIGRQRALKK
801: EPKLFNGLKF YIMGDFEVAY KGYLQDMIVA AGGTILRRRP ISNDDSEAST IIVFSVEPSK KKTLTQRRFD AEALAKSSRA RAASSSWVLD SIAGCQILDL
901: I
101: HVGDASIEKA NDKKHQGSSK SRISKKRGFT KNKEKDLDPP GPIVMKPSSQ TKKRVQLLQN QSSENSTESV ESAEKLKDST EETVIRLNEH TSLNKEENMA
201: PFFWLRDEND EENLSQPAES DPFLDVTPVD VPSFSDLKDS DHDSPSKAVE QERPNPKDMF DSEMFEWTQR PSSPEILPSP VKAKALGKDA TQMNLPKGAS
301: SNKKRKAGTA RNTVAKRLDG VSKEDYVEPS LGASISEKQE TGGTSGTSTR KDENVKAKRA TRNKGQTSRV QAGVNTHVEA EAKQGTKRKR SSVKVSPDPP
401: VAESNELSLG TEDVGKGDQE LTHGSAGTQP TEKYSLRKRR KSSASSFPKY SSATQPRGKK ILSEELNQVE DRQDLTNQKK PSVDNGTHTM QVSEKSSTMN
501: KPSLGDNALL RRCDGPPINK STCAFCQSSE DTEASGEMAH YHRGEPVSAD FSGGSKVIHA HKNCAEWAPN VYFNNLTAVN LDAELTRSRR ITCSSCGLKG
601: AALGCYNASC KSSFHVTCAK LIPECRWDNE NFVMLCPSDA SSKLPCEETS PKERKRKRTP PKRPQHSQPN QVSEKPDISE LQSKPFHGVS KKLVLCCSGL
701: TDEEKSVISE FAEVSGVTIS RKWEPRVTHI IASINDNGAC KRTLKFMMGV LEGKWILSID WIKACMNNRE YVTEEPYEIS TDVHGTRQGP YIGRQRALKK
801: EPKLFNGLKF YIMGDFEVAY KGYLQDMIVA AGGTILRRRP ISNDDSEAST IIVFSVEPSK KKTLTQRRFD AEALAKSSRA RAASSSWVLD SIAGCQILDL
901: I
001: MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR EIRGAPHMDS LVSIYKNMED ASGIKLFVSQ NNPSPSDKEK
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
101: QVRDASVEKA SDKNRQGSRK GRASKRNEYG KTKEIDVDAP GPIVMKPSSQ TKKRVQLLQN LSAESLTKPT ESVETAEKPK DYTENTVIRL DEHPSLNKEG
201: NLSPFFWLRD EDDGENSSQR TESDQLLGTT PVNVPSFSDL MDSDHESPSK EDEQQKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKVLG RDEIDLTQKK
301: LPKVKVASSK CKNRKAGSAR NTVARRSIGV SQEDNMESSA AATISEQQDS RGTSGTIIRN DVNTDENVKA KRATRSKAQS TRVQSDLNVS NEADGKQGTK
401: RKRSSIKSSP AHPIAGPNEL SLGTEIVGKG DQDQAHGPSD THPEKRSPTE KPSLKKRGRK SNASSSLKDL SGKTQKKTSE KKLKLDSHMI SSKATQPHGN
501: GILTAGLNQG GDKQDSRNNR KSTVGKDDHT MQVIEKCSTI NKSSSGGSAH LRRCNGSLTK KFTCAFCQCS EDTEASGEMT HYYRGEPVSA DFNGGSKVIH
601: VHKNCAEWAP NVYFNDLTIV NLDVELTRSR RISCSCCGLK GAALGCYNKS CKNSFHVTCA KLIPECRWDN VKFVMLCPLD ASIKLPCEEA NSKDRKCKRT
701: PKEPLHSQPK QVSGKANIRE LHIKQFHGFS KKLVLSCSGL TVEEKTVIAE FAELSGVTIS KNWDSTVTHV IASINENGAC KRTLKFMMAI LEGKWILTID
801: WIKACMKNTK YVSEEPYEIT MDVHGIREGP YLGRQRALKK KPKLFTGLKF YIMGDFELAY KGYLQDLIVA AGGTILRRRP VSSDDNEAST IVVFSVEPSK
901: KKTLTQRRSD AEALAKSARA RAASSSWVLD SIAGCQILVL I
Arabidopsis Description
BRCA1Protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.