Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16684 | Canola | plastid | 92.02 | 54.4 |
| Bra029481.1-P | Field mustard | plastid | 90.96 | 53.77 |
| CDY21291 | Canola | plastid | 86.17 | 51.27 |
| CDX90850 | Canola | plastid | 85.64 | 50.95 |
| AT4G04020.1 | Thale cress | plastid | 84.04 | 49.69 |
| GSMUA_Achr7P05510_001 | Banana | cytosol | 65.43 | 49.4 |
| CDX79139 | Canola | plastid | 81.91 | 48.28 |
| CDX82925 | Canola | plastid | 81.38 | 48.27 |
| KRH11500 | Soybean | plastid | 70.21 | 43.14 |
| KRH36517 | Soybean | plastid | 70.74 | 42.63 |
| Solyc02g081170.2.1 | Tomato | plastid | 71.81 | 41.41 |
| PGSC0003DMT400043112 | Potato | extracellular | 71.81 | 41.41 |
| Os09t0133600-01 | Rice | plastid | 65.43 | 38.56 |
| TraesCS5B01G162100.1 | Wheat | plastid | 63.83 | 38.46 |
| GSMUA_Achr3P12980_001 | Banana | plastid | 65.43 | 38.44 |
| TraesCS5A01G164600.1 | Wheat | plastid | 63.83 | 38.22 |
| Zm00001d025574_P001 | Maize | extracellular | 62.77 | 37.58 |
| Zm00001d003470_P001 | Maize | plastid | 62.77 | 37.11 |
| EES12270 | Sorghum | plastid | 63.83 | 36.36 |
| GSMUA_Achr4P20110_001 | Banana | plastid | 57.98 | 34.94 |
| HORVU0Hr1G012460.1 | Barley | cytosol, mitochondrion, nucleus | 63.3 | 31.9 |
| CDY31692 | Canola | plastid | 45.74 | 23.89 |
| CDX84202 | Canola | plastid | 44.68 | 23.2 |
| CDX94540 | Canola | plastid | 2.13 | 2.68 |
Protein Annotations
| EnsemblPlants:CDY71809 | EnsemblPlantsGene:GSBRNA2T00020487001 | InterPro:PAP/fibrillin_dom | PANTHER:PTHR31906 | PANTHER:PTHR31906:SF7 | PFAM:PF04755 |
| ProteinID:CDY71809 | ProteinID:CDY71809.1 | UniParc:UPI0004EEF091 | UniProt:A0A078JYR5 | MapMan:35.1 | : |
Description
BnaCnng74600DBnaCnng74600D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JYR5]
Coordinates
chrLK047604:-:217..1138
Molecular Weight (calculated)
20535.6 Da
IEP (calculated)
9.153
GRAVY (calculated)
-0.031
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: IVKHHATSRT LILNVSPCSY TSFVGLFPLL SRRISPLVKV DEISQTIDSD SFTVQNSVRF AGPLATTSFS TNAKFEVQSP KRVQIKFEQG VIGTPQLTDS
101: IEIPESVEVL GQKIDLNPIR GLLTSVQDTA SSVARTISSQ PPLKFSLPAD RAQSWLLTTY LDKDLRISRG DGGSIFVLFK EGSSLLNP
101: IEIPESVEVL GQKIDLNPIR GLLTSVQDTA SSVARTISSQ PPLKFSLPAD RAQSWLLTTY LDKDLRISRG DGGSIFVLFK EGSSLLNP
001: MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL
101: WGEKSGPELE ESGTRFMESD PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE LVNQLEALNP TPAPLENPEL
201: LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
301: QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD GGLFVLAREG SSLLEL
Arabidopsis Description
PAP3Probable plastid-lipid-associated protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82291]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.