Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020223.1-P | Field mustard | nucleus | 78.86 | 97.98 |
| CDY09179 | Canola | nucleus | 71.0 | 80.86 |
| CDX98183 | Canola | nucleus | 75.07 | 73.67 |
| CDY31715 | Canola | nucleus | 75.07 | 73.67 |
| CDX74505 | Canola | nucleus | 75.07 | 73.67 |
| CDY26966 | Canola | nucleus | 74.8 | 73.4 |
| CDY26965 | Canola | nucleus | 70.19 | 70.77 |
| CDY69109 | Canola | nucleus | 70.46 | 69.89 |
| AT5G22890.1 | Thale cress | nucleus | 70.46 | 69.71 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 38.75 | 50.89 |
| KRH22822 | Soybean | plastid | 35.5 | 47.12 |
| PGSC0003DMT400001105 | Potato | nucleus | 39.3 | 45.6 |
| Solyc11g066420.1.1 | Tomato | nucleus, plastid | 44.44 | 42.71 |
| VIT_06s0061g00780.t01 | Wine grape | nucleus | 44.99 | 42.56 |
| GSMUA_Achr11P... | Banana | nucleus | 38.75 | 42.06 |
| TraesCS1A01G060200.1 | Wheat | nucleus | 40.38 | 38.8 |
| Os08t0562300-01 | Rice | nucleus | 39.84 | 38.18 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 40.11 | 37.76 |
| TraesCS1D01G061200.1 | Wheat | nucleus | 38.75 | 36.95 |
| Zm00001d031895_P001 | Maize | nucleus | 39.57 | 34.84 |
| OQU80698 | Sorghum | nucleus | 39.3 | 34.12 |
| Os04t0165200-01 | Rice | nucleus | 34.15 | 33.96 |
| CDY12041 | Canola | nucleus | 30.35 | 27.38 |
| CDY57608 | Canola | nucleus | 17.62 | 27.08 |
| CDX67704 | Canola | nucleus | 17.89 | 26.83 |
| CDY03148 | Canola | nucleus | 30.89 | 26.45 |
| CDY46467 | Canola | nucleus | 31.71 | 23.98 |
| CDX91774 | Canola | nucleus | 31.71 | 23.59 |
| CDY26642 | Canola | nucleus | 17.62 | 21.96 |
| CDY12025 | Canola | nucleus | 17.07 | 21.95 |
| CDY19385 | Canola | nucleus | 17.89 | 21.71 |
| CDY03134 | Canola | nucleus | 16.8 | 21.6 |
| CDX97995 | Canola | nucleus | 17.62 | 21.1 |
| CDY06390 | Canola | nucleus | 18.97 | 20.96 |
| CDY35565 | Canola | nucleus | 19.24 | 20.94 |
| CDX88959 | Canola | nucleus | 20.33 | 20.6 |
| CDX72006 | Canola | nucleus | 20.6 | 20.38 |
| CDY29624 | Canola | nucleus | 18.7 | 20.29 |
| CDY22834 | Canola | nucleus, plastid | 18.43 | 20.12 |
| CDY57920 | Canola | nucleus | 19.51 | 20.06 |
| CDY06083 | Canola | nucleus | 20.33 | 20.05 |
| CDX93575 | Canola | nucleus | 18.16 | 19.88 |
| CDY27556 | Canola | nucleus | 19.24 | 19.83 |
| CDX95075 | Canola | nucleus | 18.16 | 19.82 |
| CDY25224 | Canola | nucleus | 18.16 | 19.82 |
| CDY22690 | Canola | nucleus | 17.34 | 18.99 |
| CDY06308 | Canola | nucleus | 17.07 | 18.69 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078FBC9 | UniProt:A0A078FBC9 | EnsemblPlants:CDY09178 | ProteinID:CDY09178 |
| ProteinID:CDY09178.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00001411001 | InterPro:IPR013087 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF41 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0004EDD88C | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
BnaA02g06040DBnaA02g06040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBC9]
Coordinates
chrLK031993:-:497890..498999
Molecular Weight (calculated)
42173.5 Da
IEP (calculated)
7.938
GRAVY (calculated)
-0.685
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQGDHIINN GEGSVCCFSE TTTTSSNPVY NNPMTAATKS SEDEDDISLS LLLNLSTMQN KVHQIKSLVS FFMISTNNNN QSTESTSYLA VANIESLVQD
101: IITAANSMMF TCQQLHISSN NNSNFDNDKI VTDFSPRVID RHNDFTRESS ANFLGVQERG RSSFLDQTTQ NLDWYGTQTI NPKKEDHRYK SRSGDYELVE
201: LGVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT REALISPTSH DKEVECSSTR HYYSCPQQGC RWNQRHEKFQ PLKSVICAKN HYKRSHCPKM
301: YMCRKCNVKH FSVLSDLRTH EKHCGDVKWI CSCGTTFSRK DKLMSHVSLF LGHSPVHCQP PQHPIIHYT
101: IITAANSMMF TCQQLHISSN NNSNFDNDKI VTDFSPRVID RHNDFTRESS ANFLGVQERG RSSFLDQTTQ NLDWYGTQTI NPKKEDHRYK SRSGDYELVE
201: LGVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT REALISPTSH DKEVECSSTR HYYSCPQQGC RWNQRHEKFQ PLKSVICAKN HYKRSHCPKM
301: YMCRKCNVKH FSVLSDLRTH EKHCGDVKWI CSCGTTFSRK DKLMSHVSLF LGHSPVHCQP PQHPIIHYT
001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
Arabidopsis Description
STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.