Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019822.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY19385 | Canola | nucleus | 94.81 | 96.05 |
| AT1G13290.1 | Thale cress | nucleus | 84.74 | 86.42 |
| PGSC0003DMT400096573 | Potato | cytosol, mitochondrion, nucleus, peroxisome | 36.69 | 73.86 |
| CDY26642 | Canola | nucleus | 70.45 | 73.31 |
| VIT_01s0011g03100.t01 | Wine grape | nucleus | 55.84 | 62.55 |
| CDY57608 | Canola | nucleus | 45.13 | 57.92 |
| KRH34760 | Soybean | nucleus | 51.3 | 57.88 |
| CDX67704 | Canola | nucleus | 45.78 | 57.32 |
| Solyc05g009770.1.1 | Tomato | nucleus | 52.92 | 56.99 |
| KRG92027 | Soybean | nucleus | 50.32 | 56.57 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 43.51 | 56.54 |
| KRH70598 | Soybean | nucleus | 58.44 | 53.89 |
| KRH75477 | Soybean | nucleus | 57.47 | 53.31 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 47.73 | 52.31 |
| TraesCS5B01G177600.1 | Wheat | nucleus, plastid | 49.03 | 47.78 |
| CDY12025 | Canola | nucleus | 43.18 | 46.34 |
| CDY03134 | Canola | nucleus | 42.53 | 45.64 |
| CDX72006 | Canola | nucleus | 52.6 | 43.43 |
| CDX88959 | Canola | nucleus | 51.3 | 43.41 |
| TraesCS5D01G184400.1 | Wheat | nucleus | 50.0 | 43.38 |
| CDY29624 | Canola | nucleus | 47.73 | 43.24 |
| TraesCS5A01G179800.1 | Wheat | nucleus | 49.68 | 43.1 |
| CDY35565 | Canola | nucleus | 47.4 | 43.07 |
| CDY06083 | Canola | nucleus | 52.27 | 43.05 |
| CDY22834 | Canola | nucleus, plastid | 47.08 | 42.9 |
| CDY25224 | Canola | nucleus | 47.08 | 42.9 |
| CDY06390 | Canola | nucleus | 46.43 | 42.81 |
| CDY57920 | Canola | nucleus | 48.38 | 41.5 |
| EER96535 | Sorghum | nucleus | 49.68 | 41.35 |
| CDY27556 | Canola | nucleus | 47.73 | 41.06 |
| Zm00001d005566_P001 | Maize | nucleus | 49.35 | 40.11 |
| CDY22690 | Canola | nucleus | 43.83 | 40.06 |
| Zm00001d020037_P001 | Maize | nucleus | 48.7 | 39.89 |
| CDX93575 | Canola | nucleus | 43.51 | 39.76 |
| CDY06308 | Canola | nucleus | 43.51 | 39.76 |
| CDX95075 | Canola | nucleus | 43.51 | 39.65 |
| Os09t0307400-00 | Rice | nucleus | 49.35 | 38.58 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 50.0 | 35.73 |
| CDY09179 | Canola | nucleus | 21.1 | 20.06 |
| CDY26966 | Canola | nucleus | 22.4 | 18.35 |
| CDY26965 | Canola | nucleus | 21.43 | 18.03 |
| CDY69109 | Canola | nucleus | 21.43 | 17.74 |
| CDY09178 | Canola | nucleus | 21.1 | 17.62 |
| CDY31715 | Canola | nucleus | 21.43 | 17.55 |
| CDX98183 | Canola | nucleus | 21.43 | 17.55 |
| CDX74505 | Canola | nucleus | 21.43 | 17.55 |
| CDY12041 | Canola | nucleus | 22.73 | 17.11 |
| CDY03148 | Canola | nucleus | 22.08 | 15.78 |
| CDY46467 | Canola | nucleus | 22.4 | 14.14 |
| CDX91774 | Canola | nucleus | 22.4 | 13.91 |
Protein Annotations
| EnsemblPlants:CDX97995 | EnsemblPlantsGene:GSBRNA2T00105353001 | GO:A0A078E7A6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF52 | PFscan:PS50157 |
| ProteinID:CDX97995 | ProteinID:CDX97995.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000253EBEE |
| MapMan:15.5.15 | : | : | : | : | : |
Description
BnaA06g07460D
Coordinates
chrLK031902:+:444735..446142
Molecular Weight (calculated)
35143.5 Da
IEP (calculated)
6.594
GRAVY (calculated)
-1.152
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MFNDNQYCIP GDEDSVVLRL GPPGQQYPNN HKPTSTKPSP NHEIDHNLPL TNPNDVTVAL HIGPPVSEKE TSGDNHEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRAKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KVWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVGDRVVSI GEGDEDDDDD DDHMEEEDER DDDEEEEDGN GESGREEKNY GIRYEHFRRY
301: GQISNDNH
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRAKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KVWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVGDRVVSI GEGDEDDDDD DDHMEEEDER DDDEEEEDGN GESGREEKNY GIRYEHFRRY
301: GQISNDNH
001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
Arabidopsis Description
WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.