Factsheet for Solyc05g009770.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	48.95	91.5
VIT_01s0011g03100.t01	Wine grape	nucleus	61.19	63.64
KRH34760	Soybean	nucleus	57.34	60.07
GSMUA_Achr6P21380_001	Banana	nucleus	48.25	58.23
KRG92027	Soybean	nucleus	55.59	58.03
AT1G13290.1	Thale cress	nucleus	59.09	55.96
CDY19385	Canola	nucleus	57.34	53.95
Solyc11g062060.1.1	Tomato	nucleus	48.6	53.26
Bra019822.1-P	Field mustard	nucleus	56.99	52.92
CDX97995	Canola	nucleus	56.99	52.92
KRH70598	Soybean	nucleus	60.84	52.1
KRH75477	Soybean	nucleus	60.14	51.81
GSMUA_Achr6P01410_001	Banana	nucleus	50.0	50.89
Solyc04g074320.1.1	Tomato	nucleus	48.25	50.55
CDY26642	Canola	nucleus	51.4	49.66
Solyc01g087050.2.1	Tomato	nucleus	48.95	46.98
TraesCS5B01G177600.1	Wheat	nucleus, plastid	51.75	46.84
TraesCS5D01G184400.1	Wheat	nucleus	52.8	42.54
TraesCS5A01G179800.1	Wheat	nucleus	52.45	42.25
Zm00001d020037_P001	Maize	nucleus	53.5	40.69
EER96535	Sorghum	nucleus	52.45	40.54
Zm00001d005566_P001	Maize	nucleus	51.4	38.79
Os09t0307400-00	Rice	nucleus	51.75	37.56
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	53.5	35.5
Solyc03g059270.2.1	Tomato	nucleus	37.41	31.29
Solyc06g074360.2.1	Tomato	nucleus	20.98	28.44
Solyc11g066420.1.1	Tomato	nucleus, plastid	23.78	17.71
Solyc06g065440.1.1	Tomato	cytosol	21.33	17.38
Solyc04g056320.1.1	Tomato	nucleus	21.33	16.35
Solyc11g017140.1.1	Tomato	nucleus	22.73	13.4

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0010087	GO:GO:0010305	GO:GO:0010588
GO:GO:0048364	GO:GO:0048367	InterPro:IPR013087	UniProt:K4BXF1	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR10593	PANTHER:PTHR10593:SF52	SMART:SM00355	SUPFAM:SSF57667	EnsemblPlantsGene:Solyc05g009770.1	EnsemblPlants:Solyc05g009770.1.1
UniParc:UPI0002766C60	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

Zinc finger protein WIP6 [Source:Projected from Arabidopsis thaliana (AT1G13290) UniProtKB/Swiss-Prot;Acc:Q9FX68]

Coordinates

chr5:+:3967598..3969256

Molecular Weight (calculated)

32564.5 Da

IEP (calculated)

7.339

GRAVY (calculated)

-1.008

Length

286 amino acids

Sequence
(BLAST)

001: MQNCHNNSIT YLSSSDQLVE DDQLSTVLSL GPPGQKNSTI FHDYFSSSSN CHEFQSYNNQ ESVTVALRID SSSTISSNNN NNPSRNKGDH NSSTNNNISL
101: VNGQYWIPTP AQILVGPTQF SCAVCNKTFN RFNNMQMHMW GHGSQYRKGP DSLKGTKQAS SMLRLPCYCC AEGCKNNIDH PRTKPLKDFR TLQTHYKRKH
201: GTKPFKCRKC GKNFAVRGDW RTHEKNCGKL WFCICGSDFK HKRSLKDHVK AFGYGHAPHS ENSYYHTEGD EDEEEEDDDE EEEEVV

Best Arabidopsis Sequence Match ( AT1G13290.1 )
(BLAST)

001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY

Arabidopsis Description

WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.