Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G177600.1 | Wheat | nucleus, plastid | 60.91 | 75.95 |
| TraesCS5D01G184400.1 | Wheat | nucleus | 67.51 | 74.93 |
| TraesCS5A01G179800.1 | Wheat | nucleus | 67.26 | 74.65 |
| Zm00001d020037_P001 | Maize | nucleus | 65.74 | 68.88 |
| EER96535 | Sorghum | nucleus | 64.21 | 68.38 |
| PGSC0003DMT400096573 | Potato | cytosol, mitochondrion, nucleus, peroxisome | 26.14 | 67.32 |
| Os09t0485600-01 | Rice | cytosol, mitochondrion, nucleus | 26.14 | 66.88 |
| Os09t0282100-00 | Rice | cytosol, mitochondrion, nucleus | 24.11 | 65.97 |
| Zm00001d005566_P001 | Maize | nucleus | 60.41 | 62.8 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 44.16 | 61.92 |
| VIT_01s0011g03100.t01 | Wine grape | nucleus | 40.1 | 57.45 |
| Os02t0196100-01 | Rice | cytosol, extracellular, nucleus | 30.71 | 55.0 |
| KRH34760 | Soybean | nucleus | 36.55 | 52.75 |
| KRG92027 | Soybean | nucleus | 36.04 | 51.82 |
| Solyc05g009770.1.1 | Tomato | nucleus | 37.56 | 51.75 |
| CDY19385 | Canola | nucleus | 38.83 | 50.33 |
| Bra019822.1-P | Field mustard | nucleus | 38.58 | 49.35 |
| CDX97995 | Canola | nucleus | 38.58 | 49.35 |
| AT1G13290.1 | Thale cress | nucleus | 37.82 | 49.34 |
| KRH70598 | Soybean | nucleus | 40.86 | 48.2 |
| KRH75477 | Soybean | nucleus | 40.61 | 48.19 |
| CDY26642 | Canola | nucleus | 36.04 | 47.97 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 49.24 | 45.01 |
| Os01t0859100-01 | Rice | nucleus, plastid | 32.99 | 34.57 |
| Os05t0444200-01 | Rice | plastid | 33.25 | 33.68 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 36.04 | 31.91 |
| Os08t0504000-01 | Rice | nucleus | 34.01 | 30.59 |
| Os04t0165200-01 | Rice | nucleus | 19.54 | 20.75 |
| Os03t0838800-00 | Rice | nucleus | 19.29 | 20.71 |
| Os08t0562300-01 | Rice | nucleus | 19.29 | 19.74 |
| Os02t0572900-01 | Rice | cytosol, extracellular, nucleus | 17.77 | 18.23 |
| Os09t0282300-00 | Rice | nucleus | 7.87 | 18.02 |
| Os12t0170400-01 | Rice | nucleus | 19.54 | 16.56 |
| Os01t0871200-03 | Rice | nucleus | 18.78 | 14.18 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | UniProt:A0A0P0XJS2 | ProteinID:BAT07364.1 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0010087 |
| GO:GO:0010305 | GO:GO:0010588 | GO:GO:0048364 | GO:GO:0048367 | InterPro:IPR013087 | EnsemblPlantsGene:Os09g0307400 |
| EnsemblPlants:Os09t0307400-00 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF52 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI000393C2C4 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
Similar to zinc finger, C2H2 type family protein. (Os09t0307400-00)
Coordinates
chr9:+:7995705..7997271
Molecular Weight (calculated)
41156.5 Da
IEP (calculated)
7.921
GRAVY (calculated)
-0.525
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSSSRYRAM HPHLYQSHHH HQHVAPPTKH GGGGAGAGGE EDDQSMLLLS LWPPGHSSHH HQHHHHGAAS SSACSSASIS AAAHSGGGGG GHGAAAAAAS
101: SWFNPSHYHG GGGGGGGFLF QEQQEPNVSI SLSIAPPCGV SGGNAAAMAA AGSFATSPLP QQPVASSAVA TAAGGGQAPS QYWIPSAAEI LVGSTQFSCA
201: VCNKTFNRFN NMQMHMWGHG SQYRKGSESL RGAITVGGAA PPASLMRLPC YCCAEGCRNN VEHPRARPLK DFRTLQTHYR RKHGARPYAC RRCGKRFAVR
301: GDWRTHEKNC GKLWFCVCGS DFKHKRSLKD HVRSFGGGHA PHIVESSSTG AGGGGGCGGA GADDDDDEYY DDDDDTVSLS RATSAHDDAD MIVV
101: SWFNPSHYHG GGGGGGGFLF QEQQEPNVSI SLSIAPPCGV SGGNAAAMAA AGSFATSPLP QQPVASSAVA TAAGGGQAPS QYWIPSAAEI LVGSTQFSCA
201: VCNKTFNRFN NMQMHMWGHG SQYRKGSESL RGAITVGGAA PPASLMRLPC YCCAEGCRNN VEHPRARPLK DFRTLQTHYR RKHGARPYAC RRCGKRFAVR
301: GDWRTHEKNC GKLWFCVCGS DFKHKRSLKD HVRSFGGGHA PHIVESSSTG AGGGGGCGGA GADDDDDEYY DDDDDTVSLS RATSAHDDAD MIVV
001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
Arabidopsis Description
WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.