Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G172600.1 | Wheat | mitochondrion | 79.86 | 83.94 |
| Os09t0485600-01 | Rice | cytosol, mitochondrion, nucleus | 69.44 | 64.94 |
| Os02t0196100-01 | Rice | cytosol, extracellular, nucleus | 65.97 | 43.18 |
| TraesCS5A01G175400.1 | Wheat | nucleus | 81.94 | 38.31 |
| TraesCS5D01G179700.1 | Wheat | nucleus | 81.25 | 37.99 |
| EER98623 | Sorghum | plastid | 79.86 | 36.51 |
| Os01t0859100-01 | Rice | nucleus, plastid | 66.67 | 25.53 |
| Os05t0444200-01 | Rice | plastid | 68.75 | 25.45 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 75.0 | 24.27 |
| Os09t0307400-00 | Rice | nucleus | 65.97 | 24.11 |
| Os08t0504000-01 | Rice | nucleus | 70.14 | 23.06 |
| Os03t0838800-00 | Rice | nucleus | 35.42 | 13.9 |
| Os04t0165200-01 | Rice | nucleus | 35.42 | 13.75 |
| Os08t0562300-01 | Rice | nucleus | 35.42 | 13.25 |
| Os02t0572900-01 | Rice | cytosol, extracellular, nucleus | 33.33 | 12.5 |
| Os12t0170400-01 | Rice | nucleus | 35.42 | 10.97 |
| Os01t0871200-03 | Rice | nucleus | 33.33 | 9.2 |
| Os09t0282300-00 | Rice | nucleus | 5.56 | 4.65 |
Protein Annotations
| EnsemblPlants:Os09t0282100-00 | EnsemblPlantsGene:Os09g0282100 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF67 | PFscan:PS50157 | ProteinID:BAT07236.1 |
| SEG:seg | UniParc:UPI000393C59C | UniProt:A0A0P0XJI5 | MapMan:15.5.15 | : | : |
Description
Similar to WIP1. (Os09t0282100-00)
Coordinates
chr9:-:6061844..6062278
Molecular Weight (calculated)
16767.3 Da
IEP (calculated)
10.421
GRAVY (calculated)
-1.028
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDDYILQM HMWGHGSQYR RGPESLRGTQ PAAMLRLPCF CCAAGCRNNV DHPRARPLKD FRTLQTHYKR KHCAKPFACR KCGKPLAVRG DWRTHEKNCG
101: RRWHCACGSD FKHKRSLKDH IRAFGRDHRE RPPPPPPHPL LPLP
101: RRWHCACGSD FKHKRSLKDH IRAFGRDHRE RPPPPPPHPL LPLP
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Arabidopsis Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.