Factsheet for Os06t0612300-01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

nucleus 4
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0485600-01	Rice	cytosol, mitochondrion, nucleus	27.87	80.52
PGSC0003DMT400017556	Potato	nucleus	25.17	78.32
Os09t0282100-00	Rice	cytosol, mitochondrion, nucleus	24.27	75.0
TraesCS7A01G404400.1	Wheat	nucleus	60.9	73.64
TraesCS7B01G304000.1	Wheat	nucleus	60.9	73.24
TraesCS7D01G397800.1	Wheat	nucleus	60.45	72.7
EER88644	Sorghum	nucleus, plastid	61.57	67.82
CDY57608	Canola	nucleus	35.96	66.67
Zm00001d036812_P001	Maize	nucleus	58.2	66.58
CDX67704	Canola	nucleus	36.4	65.85
Bra003295.1-P	Field mustard	nucleus	36.4	65.85
Solyc11g062060.1.1	Tomato	nucleus	38.43	65.52
Zm00001d046774_P001	Maize	nucleus	57.98	64.82
PGSC0003DMT400077822	Potato	nucleus	44.04	61.64
VIT_08s0007g08070.t01	Wine grape	nucleus	47.64	61.45
Solyc01g087050.2.1	Tomato	nucleus	40.67	60.74
Bra007346.1-P	Field mustard	nucleus	41.8	60.59
VIT_06s0004g01870.t01	Wine grape	nucleus	44.94	59.88
Os02t0196100-01	Rice	cytosol, extracellular, nucleus	29.21	59.09
PGSC0003DMT400035408	Potato	nucleus	45.84	58.79
GSMUA_Achr3P11870_001	Banana	nucleus	44.49	58.24
KRG95308	Soybean	nucleus, plastid	45.39	57.88
CDX88959	Canola	nucleus	46.52	56.87
Bra014612.1-P	Field mustard	nucleus, plastid	46.29	56.59
CDX72006	Canola	nucleus	47.42	56.57
KRH66988	Soybean	nucleus	45.39	56.42
CDY06083	Canola	nucleus	47.42	56.42
KRH71956	Soybean	nucleus, plastid	46.07	55.26
VIT_13s0064g01060.t01	Wine grape	nucleus	42.47	55.1
AT3G57670.1	Thale cress	nucleus	46.97	54.57
KRH24697	Soybean	nucleus, plastid	41.8	54.55
KRH10191	Soybean	nucleus, plastid	42.25	54.49
CDY06390	Canola	nucleus	40.9	54.49
KRH23146	Soybean	nucleus, plastid	42.7	54.29
KRH29701	Soybean	nucleus	41.57	54.25
AT1G51220.1	Thale cress	nucleus	40.9	54.01
CDY22834	Canola	nucleus, plastid	40.45	53.25
Bra030450.1-P	Field mustard	nucleus	40.67	53.24
KRH27491	Soybean	nucleus, plastid	42.02	53.12
CDY25224	Canola	nucleus	40.22	52.96
CDY29624	Canola	nucleus	40.45	52.94
KRH20837	Soybean	nucleus, plastid	42.25	52.66
Bra018902.1-P	Field mustard	plastid	39.78	52.52
CDY35565	Canola	nucleus	40.0	52.51
KRH33045	Soybean	nucleus, plastid	45.39	52.33
Bra023918.1-P	Field mustard	nucleus	41.12	50.97
CDY57920	Canola	nucleus	41.12	50.97
KRH43510	Soybean	nucleus, plastid	39.55	50.87
CDY27556	Canola	nucleus	40.9	50.84
Bra031239.1-P	Field mustard	nucleus	40.9	50.7
KRH13927	Soybean	nucleus, plastid	37.75	49.12
Os08t0504000-01	Rice	nucleus	45.84	46.58
AT3G20880.1	Thale cress	nucleus	41.8	45.15
Solyc03g059270.2.1	Tomato	nucleus	33.48	43.57
Os01t0859100-01	Rice	nucleus, plastid	35.96	42.55
Os05t0444200-01	Rice	plastid	35.51	40.62
Os09t0282300-00	Rice	nucleus	15.06	38.95
Os09t0307400-00	Rice	nucleus	31.91	36.04
Os03t0838800-00	Rice	nucleus	16.85	20.44
Os08t0562300-01	Rice	nucleus	16.4	18.96
Os04t0165200-01	Rice	nucleus	15.28	18.33
Os02t0572900-01	Rice	cytosol, extracellular, nucleus	14.83	17.19
Os12t0170400-01	Rice	nucleus	15.73	15.05
Os01t0871200-03	Rice	nucleus	15.96	13.6

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:4341518	EMBL:AK071104	ProteinID:BAD35514.1	ProteinID:BAD35546.1
ProteinID:BAF19978.1	ProteinID:BAS98604.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR013087	EnsemblPlantsGene:Os06g0612300	EnsemblPlants:Os06t0612300-01	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF61	UniProt:Q69WZ1	SMART:SM00355	SUPFAM:SSF57667
TMHMM:TMhelix	UniParc:UPI0000403802	RefSeq:XP_015642156.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

Similar to T6J4.5 protein (WIP6 protein). (Os06t0612300-01)

Coordinates

chr6:+:24453131..24456495

Molecular Weight (calculated)

48432.5 Da

IEP (calculated)

7.357

GRAVY (calculated)

-0.607

Length

445 amino acids

Sequence
(BLAST)

001: MHTHTQDTTT LPLHLSLFIT VVCLLLHPLC YLLFSFSSYL ELAPYYQSSS MGDPYTNFLR GYHHHHRSHH PLHFPPPPPP PPPPYAASFS GLYSSYLHPP
101: PPPSSPPIRE ALPLLSLTPS TTHDDDHHHR RHDQDHHHHH KQGQEKNSHG GGGAASCSNN DDKRESPSAA AAADDQAAEV TVALHIGLPS PSPSDAAAAA
201: GNQAAAAAAA EASAAGGGSS RMQVEEEGGE EEDEDEAAAA AATATLPLGC ASIGIGKLTK GQYWIPTPSQ ILIGPTQFSC PVCYKTFNRY NNMQMHMWGH
301: GSQYRKGPES LRGTQPTAML RLPCYCCAAG CRNNIDHPRA RPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC ACGSDFKHKR
401: SLKDHIRAFG RGHAACGIDS FDDLDADDDP SSDLDHASAS ASRVG

Best Arabidopsis Sequence Match ( AT3G57670.1 )
(BLAST)

001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK

Arabidopsis Description

WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.