Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018439.1-P | |
| Bra019932.1-P | |
| Bra031714.1-P | |
| Bra036963.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57670.1 | Bra018439.1-P | AT1G10470.1 | 18642946 |
| AT3G57670.1 | Bra019932.1-P | AT1G10470.1 | 18642946 |
| AT3G57670.1 | Bra031714.1-P | AT1G10470.1 | 18642946 |
| AT3G57670.1 | Bra036963.1-P | AT1G10470.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003295.1-P | Field mustard | nucleus | 73.29 | 91.46 |
| CDY06083 | Canola | nucleus | 97.72 | 80.21 |
| CDX72006 | Canola | nucleus | 97.39 | 80.16 |
| AT3G57670.1 | Thale cress | nucleus | 90.55 | 72.58 |
| Bra014612.1-P | Field mustard | nucleus, plastid | 85.02 | 71.7 |
| PGSC0003DMT400077822 | Potato | nucleus | 61.56 | 59.43 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 66.12 | 58.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 57.33 | 53.82 |
| Bra030450.1-P | Field mustard | nucleus | 56.03 | 50.59 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 59.93 | 50.0 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 59.93 | 49.73 |
| Bra019822.1-P | Field mustard | nucleus | 49.84 | 49.68 |
| Bra018902.1-P | Field mustard | plastid | 54.4 | 49.55 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 59.28 | 49.19 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 56.68 | 48.2 |
| Bra028067.1-P | Field mustard | nucleus | 44.63 | 47.74 |
| Bra023918.1-P | Field mustard | nucleus | 55.7 | 47.63 |
| Bra031239.1-P | Field mustard | nucleus | 55.05 | 47.08 |
| EER88644 | Sorghum | nucleus, plastid | 61.89 | 47.03 |
| Zm00001d036812_P001 | Maize | nucleus | 58.96 | 46.53 |
| Zm00001d046774_P001 | Maize | nucleus | 59.28 | 45.73 |
| Bra018638.1-P | Field mustard | nucleus | 47.23 | 43.03 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 60.59 | 41.8 |
| Solyc03g059270.2.1 | Tomato | nucleus | 46.25 | 41.52 |
| Bra031621.1-P | Field mustard | nucleus | 43.65 | 39.76 |
| Bra002438.1-P | Field mustard | nucleus | 21.5 | 17.55 |
| Bra040971.1-P | Field mustard | nucleus | 23.78 | 17.14 |
| Bra036750.1-P | Field mustard | nucleus | 23.13 | 14.46 |
| Bra020224.1-P | Field mustard | nucleus | 12.7 | 12.96 |
| Bra020223.1-P | Field mustard | nucleus | 12.38 | 12.79 |
| Bra002437.1-P | Field mustard | nucleus | 4.89 | 6.02 |
Protein Annotations
| EnsemblPlants:Bra007346.1 | EnsemblPlants:Bra007346.1-P | EnsemblPlantsGene:Bra007346 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0002542D4D |
| UniProt:M4CT04 | MapMan:15.5.15 | : | : | : | : |
Description
AT3G57670 (E=2e-138) NTT | NTT (NO TRANSMITTING TRACT); nucleic acid binding / transcription factor/ zinc ion binding
Coordinates
chrA09:+:28738081..28739874
Molecular Weight (calculated)
34823.7 Da
IEP (calculated)
6.947
GRAVY (calculated)
-0.935
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIKFKNHLH HHDHQIQEPP SISMDVDYDH HHHQDDHNLD DHDHDVTVAL HIGLPSPSPQ DMASLLMMSS SSSSSRPTTH YLEDMNGKKD LDNDYHQGGV
101: GGGEDDDEDS VGGDGGCRIS RLNKGQYWIP TPSQILIGPT QFSCPVCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TGMLRLPCYC CAPGCRNNID
201: HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKVFAVRGD WRTHEKNCGK LWYCICGSDF KPKRSLKDHI KAFGNGHGAY GIDGFDEEDE PASEVEQLDN
301: DHESISK
101: GGGEDDDEDS VGGDGGCRIS RLNKGQYWIP TPSQILIGPT QFSCPVCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TGMLRLPCYC CAPGCRNNID
201: HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKVFAVRGD WRTHEKNCGK LWYCICGSDF KPKRSLKDHI KAFGNGHGAY GIDGFDEEDE PASEVEQLDN
301: DHESISK
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.