Factsheet for Bra023918.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57920	Canola	nucleus	99.72	99.72
Bra031239.1-P	Field mustard	nucleus	86.35	86.35
Bra030450.1-P	Field mustard	nucleus	67.69	71.47
Bra018902.1-P	Field mustard	plastid	66.85	71.22
AT3G20880.1	Thale cress	nucleus	79.67	69.42
Bra003295.1-P	Field mustard	nucleus	43.73	63.82
Solyc11g062060.1.1	Tomato	nucleus	45.4	62.45
GSMUA_Achr9P12600_001	Banana	nucleus	50.7	58.52
VIT_06s0004g01870.t01	Wine grape	nucleus	52.09	55.99
GSMUA_Achr3P03850_001	Banana	plastid	50.14	55.73
Bra007346.1-P	Field mustard	nucleus	47.63	55.7
PGSC0003DMT400035408	Potato	nucleus	53.48	55.33
GSMUA_AchrUn_...	Banana	plastid	49.3	54.13
GSMUA_Achr8P25650_001	Banana	nucleus, plastid	45.13	54.0
GSMUA_Achr4P01560_001	Banana	nucleus	48.19	53.73
GSMUA_Achr6P03470_001	Banana	nucleus	47.63	53.6
Bra014612.1-P	Field mustard	nucleus, plastid	54.32	53.57
KRH10191	Soybean	nucleus, plastid	50.14	52.17
GSMUA_Achr3P11050_001	Banana	cytosol, nucleus, plastid	49.03	51.61
KRH29701	Soybean	nucleus	48.47	51.03
KRH24697	Soybean	nucleus, plastid	48.47	51.03
GSMUA_AchrUn_...	Banana	nucleus	48.47	50.58
KRH23146	Soybean	nucleus, plastid	49.03	50.29
TraesCS7A01G404400.1	Wheat	nucleus	50.7	49.46
TraesCS7D01G397800.1	Wheat	nucleus	50.7	49.19
TraesCS7B01G304000.1	Wheat	nucleus	50.42	48.92
Bra019822.1-P	Field mustard	nucleus	41.5	48.38
Bra028067.1-P	Field mustard	nucleus	38.44	48.08
Zm00001d036812_P001	Maize	nucleus	50.42	46.53
EER88644	Sorghum	nucleus, plastid	51.25	45.54
Zm00001d046774_P001	Maize	nucleus	50.14	45.23
Bra018638.1-P	Field mustard	nucleus	41.5	44.21
Bra031621.1-P	Field mustard	nucleus	39.0	41.54
Os06t0612300-01	Rice	endoplasmic reticulum, vacuole	50.97	41.12
Bra002438.1-P	Field mustard	nucleus	20.33	19.41
Bra040971.1-P	Field mustard	nucleus	22.01	18.54
Bra036750.1-P	Field mustard	nucleus	20.89	15.27
Bra020223.1-P	Field mustard	nucleus	11.42	13.8
Bra020224.1-P	Field mustard	nucleus	10.86	12.96
Bra002437.1-P	Field mustard	nucleus	5.85	8.43

Protein Annotations

EnsemblPlants:Bra023918.1	EnsemblPlants:Bra023918.1-P	EnsemblPlantsGene:Bra023918	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF61
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI0002544722	UniProt:M4E564
MapMan:15.5.15	:	:	:	:	:

Description

AT3G20880 (E=2e-152) | zinc finger (C2H2 type) protein (WIP4)

Coordinates

chrA01:+:21032643..21034654

Molecular Weight (calculated)

40589.0 Da

IEP (calculated)

7.116

GRAVY (calculated)

-0.799

Length

359 amino acids

Sequence
(BLAST)

001: MSDPACIFRN GFLDNYDYSF NYSTSLSHIY NSNGSFYSSN TTNINPNSTS PDSPPLREAL PLLSLSPIHK HQEASVPHHE YYFMETIKQS SNSSLFDHDL
101: GQCQETQHHD VTVDLHLGLP NLGGDAIACG GGGSSSSDAI LDSTDQEHHH DFHQDRHQYQ EVEVTLVSDH DGHGGVQRGI HHQYWIPTPS QILMGPTQFS
201: CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LRLSCYCCAP GCKNNINHPR ARPLKDFRTL QTHYKRKHGA RPFACRRCGK AFAVKGDWRT
301: HEKNCGKLWY CSCGSDFKHK RSLKDHVKAF GNGHVPCFGN DCFGYHEDEE AASDVEHQD

Best Arabidopsis Sequence Match ( AT3G20880.1 )
(BLAST)

001: MLFSTVLSHR TLYILTCPNT LIHSYTHPHI HAYLAFTGFL TQLHHLEISC LLLLFFSLSS LLKLMADPDC IFRNGYVDYY NYSFNYATSL SRIYNSHDSF
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE

Arabidopsis Description

WIP4Zinc finger protein WIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W030]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.