Factsheet for Bra040971.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12041	Canola	nucleus	93.19	97.07
Bra036750.1-P	Field mustard	nucleus	78.64	68.23
AT1G34370.1	Thale cress	nucleus	75.82	64.73
Solyc06g065440.1.1	Tomato	cytosol	46.95	56.98
GSMUA_Achr5P01170_001	Banana	nucleus	47.65	51.65
PGSC0003DMT400067092	Potato	nucleus	51.88	51.04
VIT_18s0072g00840.t01	Wine grape	nucleus	61.03	49.34
Solyc11g017140.1.1	Tomato	nucleus	55.87	49.07
KRH08551	Soybean	nucleus, plastid	57.98	47.41
GSMUA_Achr6P18840_001	Banana	nucleus	45.07	46.49
PGSC0003DMT400023881	Potato	nucleus	55.4	46.0
KXG33778	Sorghum	nucleus	53.05	43.55
Zm00001d012260_P001	Maize	nucleus	52.58	43.16
Zm00001d042686_P001	Maize	nucleus	51.88	42.66
Os01t0871200-03	Rice	nucleus	50.94	41.57
TraesCS3D01G375000.1	Wheat	nucleus	49.3	40.38
TraesCS3A01G381900.1	Wheat	nucleus	49.06	40.35
TraesCS3B01G414500.1	Wheat	nucleus	48.83	40.0
Bra002438.1-P	Field mustard	nucleus	27.46	31.12
Bra003295.1-P	Field mustard	nucleus	16.9	29.27
Bra018902.1-P	Field mustard	plastid	19.01	24.04
Bra030450.1-P	Field mustard	nucleus	19.01	23.82
Bra007346.1-P	Field mustard	nucleus	17.14	23.78
Bra020223.1-P	Field mustard	nucleus	16.43	23.57
Bra020224.1-P	Field mustard	nucleus	16.43	23.26
Bra019822.1-P	Field mustard	nucleus	16.43	22.73
Bra028067.1-P	Field mustard	nucleus	15.26	22.65
Bra018638.1-P	Field mustard	nucleus	17.61	22.26
Bra023918.1-P	Field mustard	nucleus	18.54	22.01
Bra031239.1-P	Field mustard	nucleus	18.31	21.73
Bra014612.1-P	Field mustard	nucleus, plastid	17.84	20.88
Bra031621.1-P	Field mustard	nucleus	15.96	20.18
Bra002437.1-P	Field mustard	nucleus	8.92	15.26

Protein Annotations

EnsemblPlants:Bra040971.1	EnsemblPlants:Bra040971.1-P	EnsemblPlantsGene:Bra040971	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000253EB46
UniProt:M4FIP2	MapMan:15.5.15	:	:	:	:

Description

AT1G34370 (E=1e-128) STOP1 | STOP1 (sensitive to proton rhizotoxicity 1); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrScaffold000345:+:11846..13126

Molecular Weight (calculated)

46256.5 Da

IEP (calculated)

7.123

GRAVY (calculated)

-0.502

Length

426 amino acids

Sequence
(BLAST)

001: MEDEEEGEPN LHVFKASSSG KDNNNNNNGG QASVQGVKAQ AWDPRTMLCN LSFMEQKIHE LQGLVHLILG RNGQLQDEQQ QLITADLTSI IIQLISTAGS
101: LLPSVNMLST TAPGSALFPF PREANNLASQ TLNNGGASQE LEDDAEEGEN LPPGSYEIKQ LEKEEILAPH TNFCTICGKG FKRDANLRMH MRGHGDQYKT
201: PAALAKPPTK ETLPGSDAPM LIKRYSCPFP GCKRNKDHKR FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGQNK WLCSCGTTFS
301: RKDKLFGHIA LFQGHTPAIP LEDTKPSAAA SSQRGSSGCG NSNNNAAMVS FSLGSAANAN QETSQPCVMD GKTSFEESFS PLSFDICNFG GFPRSIFDDS
401: FQMLISSACG CSPINGGVGS VSDTSL

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.