Factsheet for Bra036750.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46467	Canola	nucleus	99.19	99.8
CDX91774	Canola	nucleus	97.76	96.77
AT1G34370.1	Thale cress	nucleus	83.91	82.57
Bra040971.1-P	Field mustard	nucleus	68.23	78.64
Solyc06g065440.1.1	Tomato	cytosol	43.79	61.25
VIT_18s0072g00840.t01	Wine grape	nucleus	62.93	58.63
PGSC0003DMT400067092	Potato	nucleus	48.47	54.97
GSMUA_Achr5P01170_001	Banana	nucleus	43.38	54.2
Solyc11g017140.1.1	Tomato	nucleus	53.16	53.81
KRH08551	Soybean	nucleus, plastid	56.82	53.55
PGSC0003DMT400023881	Potato	nucleus	54.79	52.44
GSMUA_Achr6P18840_001	Banana	nucleus	42.97	51.09
KXG33778	Sorghum	nucleus	49.08	46.44
Zm00001d012260_P001	Maize	nucleus	48.88	46.24
Zm00001d042686_P001	Maize	nucleus	48.27	45.75
Os01t0871200-03	Rice	nucleus	48.27	45.4
TraesCS3A01G381900.1	Wheat	nucleus	47.25	44.79
TraesCS3D01G375000.1	Wheat	nucleus	47.25	44.62
TraesCS3B01G414500.1	Wheat	nucleus	47.05	44.42
Bra002438.1-P	Field mustard	nucleus	25.05	32.71
Bra003295.1-P	Field mustard	nucleus	14.46	28.86
Bra020224.1-P	Field mustard	nucleus	15.89	25.91
Bra020223.1-P	Field mustard	nucleus	15.07	24.92
Bra018902.1-P	Field mustard	plastid	15.89	23.15
Bra007346.1-P	Field mustard	nucleus	14.46	23.13
Bra030450.1-P	Field mustard	nucleus	15.89	22.94
Bra018638.1-P	Field mustard	nucleus	15.68	22.85
Bra028067.1-P	Field mustard	nucleus	13.24	22.65
Bra019822.1-P	Field mustard	nucleus	13.85	22.08
Bra031239.1-P	Field mustard	nucleus	15.68	21.45
Bra031621.1-P	Field mustard	nucleus	14.46	21.07
Bra023918.1-P	Field mustard	nucleus	15.27	20.89
Bra014612.1-P	Field mustard	nucleus, plastid	14.66	19.78
Bra002437.1-P	Field mustard	nucleus	8.76	17.27

Protein Annotations

EnsemblPlants:Bra036750.1	EnsemblPlants:Bra036750.1-P	EnsemblPlantsGene:Bra036750	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71
PFAM:PF12874	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0002545FC7	UniProt:M4F6P0	MapMan:15.5.15	:	:	:

Description

AT1G34370 (E=2e-162) STOP1 | STOP1 (sensitive to proton rhizotoxicity 1); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA08:-:7337108..7338583

Molecular Weight (calculated)

54897.5 Da

IEP (calculated)

6.290

GRAVY (calculated)

-0.667

Length

491 amino acids

Sequence
(BLAST)

001: MEPEDDLCQN NWGGSSSSSS SKRREQVCFT SQHKWEDASI LDYEMGMEEE PAFQENSNNN NGGQVNVDFL QGVRAQAWDP RTMLSNLSFM EEKIHELQDL
101: VHLMVARNGQ LQGRQEQLVA QQQQLITTDL TSIIIQLIST AGSLLPSVKH HNMSTAPGPF TGSALFPYPR EANNLASQTL NNNNNNTCEF DLPKPIVVEE
201: EHEMKDEDDV EEGENLLPGS YEILQLEKEE ILAPHTHFCT ICGKGFKRDA NLRMHMRGHG DEYKTPAALA KPNKEAVPGS EPMLIKRYSC PFPGCKRNKD
301: HKKFQPLKTI LCVKNHYKRT HCDKSFTRSR CHTKKFSVIA DLKTHEKHCG KNKWLCSCGT TFSRKDKLFG HIALFQGHTP AIPLEETKPS AQKGSSACEN
401: SNNNNTGMVG FNLGSATNAI EEVAQPGFMD GKIRFEDSFS PLSFDTCNFG GFHEFPRPMF DDSESSFQML ISSACGFSPR NGGESVSNTS L

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.