Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018439.1-P | |
| Bra019932.1-P | |
| Bra031714.1-P | |
| Bra036963.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57670.1 | Bra018439.1-P | AT1G10470.1 | 18642946 |
| AT3G57670.1 | Bra019932.1-P | AT1G10470.1 | 18642946 |
| AT3G57670.1 | Bra031714.1-P | AT1G10470.1 | 18642946 |
| AT3G57670.1 | Bra036963.1-P | AT1G10470.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67704 | Canola | nucleus | 100.0 | 100.0 |
| CDY57608 | Canola | nucleus | 96.75 | 99.17 |
| Bra007346.1-P | Field mustard | nucleus | 91.46 | 73.29 |
| AT3G57670.1 | Thale cress | nucleus | 92.68 | 59.53 |
| Bra014612.1-P | Field mustard | nucleus, plastid | 87.4 | 59.07 |
| PGSC0003DMT400077822 | Potato | nucleus | 68.7 | 53.14 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 74.39 | 53.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 65.45 | 49.24 |
| Bra030450.1-P | Field mustard | nucleus | 65.04 | 47.06 |
| Bra019822.1-P | Field mustard | nucleus | 57.32 | 45.78 |
| Bra018902.1-P | Field mustard | plastid | 62.6 | 45.7 |
| Bra028067.1-P | Field mustard | nucleus | 51.63 | 44.25 |
| Bra023918.1-P | Field mustard | nucleus | 63.82 | 43.73 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 65.04 | 43.48 |
| Bra031239.1-P | Field mustard | nucleus | 63.41 | 43.45 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 65.04 | 43.24 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 65.04 | 43.24 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 63.41 | 43.21 |
| Zm00001d046774_P001 | Maize | nucleus | 67.07 | 41.46 |
| EER88644 | Sorghum | nucleus, plastid | 67.89 | 41.34 |
| Zm00001d036812_P001 | Maize | nucleus | 65.04 | 41.13 |
| Bra018638.1-P | Field mustard | nucleus | 54.88 | 40.06 |
| Bra031621.1-P | Field mustard | nucleus | 50.81 | 37.09 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 65.85 | 36.4 |
| Solyc03g059270.2.1 | Tomato | nucleus | 49.59 | 35.67 |
| Bra002438.1-P | Field mustard | nucleus | 26.02 | 17.02 |
| Bra040971.1-P | Field mustard | nucleus | 29.27 | 16.9 |
| Bra036750.1-P | Field mustard | nucleus | 28.86 | 14.46 |
| Bra020223.1-P | Field mustard | nucleus | 15.04 | 12.46 |
| Bra020224.1-P | Field mustard | nucleus | 15.04 | 12.29 |
| Bra002437.1-P | Field mustard | nucleus | 5.28 | 5.22 |
Protein Annotations
| EnsemblPlants:Bra003295.1 | EnsemblPlants:Bra003295.1-P | EnsemblPlantsGene:Bra003295 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFAM:PF00096 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI00025415B4 | UniProt:M4CGG2 | MapMan:15.5.15 | : | : | : |
Description
AT3G57670 (E=7e-130) NTT | NTT (NO TRANSMITTING TRACT); nucleic acid binding / transcription factor/ zinc ion binding
Coordinates
chrA07:+:12453957..12455592
Molecular Weight (calculated)
27950.6 Da
IEP (calculated)
8.181
GRAVY (calculated)
-1.010
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFLTLSSS SSSSRTTHHH ENMNNQKDLD NDYHHEGTGG GEDDDEDSVG GDGACRISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW
101: GHGSEYRKGP ESLRGTQPTG MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH
201: KRSLKDHIKA FGNGHGAYGI DGFDDEDETA SEVEQLDNDH ESRRSK
101: GHGSEYRKGP ESLRGTQPTG MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH
201: KRSLKDHIKA FGNGHGAYGI DGFDDEDETA SEVEQLDNDH ESRRSK
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.