Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400058306 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57670.1 | PGSC0003DMT400058306 | AT1G10470.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017556 | Potato | nucleus | 35.85 | 79.72 |
| CDY57608 | Canola | nucleus | 53.14 | 70.42 |
| PGSC0003DMT400096573 | Potato | cytosol, mitochondrion, nucleus, peroxisome | 33.33 | 69.28 |
| Bra003295.1-P | Field mustard | nucleus | 53.14 | 68.7 |
| CDX67704 | Canola | nucleus | 53.14 | 68.7 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 67.61 | 62.32 |
| Bra007346.1-P | Field mustard | nucleus | 59.43 | 61.56 |
| GSMUA_AchrUn_... | Banana | nucleus | 61.01 | 59.33 |
| Solyc03g059270.2.1 | Tomato | nucleus | 63.52 | 59.06 |
| CDX72006 | Canola | nucleus | 66.67 | 56.84 |
| PGSC0003DMT400035408 | Potato | nucleus | 61.95 | 56.77 |
| KRH71956 | Soybean | nucleus, plastid | 66.04 | 56.6 |
| CDY06083 | Canola | nucleus | 66.35 | 56.42 |
| AT3G57670.1 | Thale cress | nucleus | 66.98 | 55.61 |
| KRH33045 | Soybean | nucleus, plastid | 65.41 | 53.89 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 58.8 | 50.82 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 58.8 | 50.54 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 57.23 | 50.42 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 58.49 | 50.27 |
| PGSC0003DMT400018308 | Potato | nucleus, plastid | 49.37 | 48.16 |
| Zm00001d036812_P001 | Maize | nucleus | 57.86 | 47.3 |
| EER88644 | Sorghum | nucleus, plastid | 60.06 | 47.28 |
| Zm00001d046774_P001 | Maize | nucleus | 58.8 | 46.98 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 61.64 | 44.04 |
| PGSC0003DMT400079144 | Potato | nucleus | 45.91 | 30.61 |
| PGSC0003DMT400001105 | Potato | nucleus | 20.13 | 20.13 |
| PGSC0003DMT400008898 | Potato | extracellular, nucleus | 21.7 | 18.75 |
| PGSC0003DMT400067092 | Potato | nucleus | 22.64 | 16.63 |
| PGSC0003DMT400023881 | Potato | nucleus | 23.27 | 14.43 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:GO:0000003 | GO:GO:0001709 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009856 | GO:GO:0009860 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010500 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0030154 | GO:GO:0040007 | GO:GO:1990058 | InterPro:IPR013087 | UniProt:M1CYY6 | PFAM:PF00096 |
| EnsemblPlantsGene:PGSC0003DMG400030271 | PGSC:PGSC0003DMG400030271 | EnsemblPlants:PGSC0003DMT400077822 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF98 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00029495BB | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
TRANSPARENT TESTA 1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030271]
Coordinates
chr3:-:20855507..20857979
Molecular Weight (calculated)
36084.9 Da
IEP (calculated)
6.138
GRAVY (calculated)
-0.935
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDPNFYSQE EEWLKLNNPN IPSPPPNNNY YETPPSPPLK EALPLLSLLK HDDDDDDDDE GCCSISDLDK KGRDIDDNSC TKDDEDEDVT VALHIGLPNP
101: SSADLASILS SNNNNDDFSI PMNMINTTST STSTSRQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCY
201: CCTPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGQGHGP YGIHSFDDDD
301: EDPASEVEQD NPQHTHSL
101: SSADLASILS SNNNNDDFSI PMNMINTTST STSTSRQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCY
201: CCTPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGQGHGP YGIHSFDDDD
301: EDPASEVEQD NPQHTHSL
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.