Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003295.1-P | Field mustard | nucleus | 99.17 | 96.75 |
| CDX67704 | Canola | nucleus | 99.17 | 96.75 |
| CDX72006 | Canola | nucleus | 91.25 | 58.71 |
| CDY06083 | Canola | nucleus | 91.25 | 58.56 |
| AT3G57670.1 | Thale cress | nucleus | 92.08 | 57.7 |
| CDX88959 | Canola | nucleus | 87.08 | 57.42 |
| PGSC0003DMT400077822 | Potato | nucleus | 70.42 | 53.14 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 75.83 | 52.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 66.67 | 48.93 |
| CDY29624 | Canola | nucleus | 65.83 | 46.47 |
| CDY35565 | Canola | nucleus | 65.42 | 46.31 |
| CDY25224 | Canola | nucleus | 64.17 | 45.56 |
| CDY22834 | Canola | nucleus, plastid | 64.17 | 45.56 |
| CDY06390 | Canola | nucleus | 63.33 | 45.51 |
| CDY19385 | Canola | nucleus | 57.5 | 45.39 |
| CDX97995 | Canola | nucleus | 57.92 | 45.13 |
| CDY12025 | Canola | nucleus | 53.33 | 44.6 |
| CDY03134 | Canola | nucleus | 52.5 | 43.9 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 65.0 | 43.21 |
| CDY57920 | Canola | nucleus | 64.58 | 43.18 |
| CDY27556 | Canola | nucleus | 64.17 | 43.02 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 65.83 | 42.93 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 65.83 | 42.7 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 65.83 | 42.7 |
| CDY26642 | Canola | nucleus | 51.67 | 41.89 |
| Zm00001d046774_P001 | Maize | nucleus | 67.92 | 40.95 |
| EER88644 | Sorghum | nucleus, plastid | 68.75 | 40.84 |
| Zm00001d036812_P001 | Maize | nucleus | 65.83 | 40.62 |
| CDX93575 | Canola | nucleus | 55.42 | 39.47 |
| CDX95075 | Canola | nucleus | 55.42 | 39.35 |
| CDY22690 | Canola | nucleus | 53.75 | 38.28 |
| CDY06308 | Canola | nucleus | 52.92 | 37.69 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 66.67 | 35.96 |
| Solyc03g059270.2.1 | Tomato | nucleus | 50.42 | 35.38 |
| CDY09179 | Canola | nucleus | 25.42 | 18.83 |
| CDY09178 | Canola | nucleus | 27.08 | 17.62 |
| CDY26966 | Canola | nucleus | 27.5 | 17.55 |
| CDY26965 | Canola | nucleus | 26.67 | 17.49 |
| CDY31715 | Canola | nucleus | 27.08 | 17.29 |
| CDX98183 | Canola | nucleus | 27.08 | 17.29 |
| CDX74505 | Canola | nucleus | 27.08 | 17.29 |
| CDY69109 | Canola | nucleus | 26.67 | 17.2 |
| CDY12041 | Canola | nucleus | 29.17 | 17.11 |
| CDY03148 | Canola | nucleus | 29.58 | 16.47 |
| CDY46467 | Canola | nucleus | 30.0 | 14.75 |
| CDX91774 | Canola | nucleus | 30.0 | 14.52 |
Protein Annotations
| EnsemblPlants:CDY57608 | EnsemblPlantsGene:GSBRNA2T00022407001 | Gene3D:3.30.160.60 | GO:A0A078J4F2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFAM:PF00096 | PFscan:PS50157 | ProteinID:CDY57608 | ProteinID:CDY57608.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EE601C | UniProt:A0A078J4F2 | MapMan:15.5.15 | : |
Description
BnaC06g42710DBnaC06g42710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4F2]
Coordinates
chrLK033588:-:22042..23701
Molecular Weight (calculated)
27418.1 Da
IEP (calculated)
8.432
GRAVY (calculated)
-0.963
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFLTLSSS SSSSRTTHHH ENMNNQIDLD NDYHHEGDDE DSVGGDGACR ISRLNKGQYW IPTPSQILIG PTQFSCPVCF KTFNRYNNMQ MHMWGHGSEY
101: RKGPESLRGT QPTGMLRLPC YCCAPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCICGS DFKHKRSLKD
201: HIKAFGNGHG AYGINGFDDE DETASEVEQL DNDHESRRSK
101: RKGPESLRGT QPTGMLRLPC YCCAPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCICGS DFKHKRSLKD
201: HIKAFGNGHG AYGINGFDDE DETASEVEQL DNDHESRRSK
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.