Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57920 | Canola | nucleus | 95.53 | 95.26 |
| CDY06390 | Canola | nucleus | 76.26 | 81.74 |
| CDY22834 | Canola | nucleus, plastid | 68.44 | 72.49 |
| CDY29624 | Canola | nucleus | 68.72 | 72.35 |
| CDY35565 | Canola | nucleus | 68.44 | 72.27 |
| CDY25224 | Canola | nucleus | 67.04 | 71.01 |
| AT3G20880.1 | Thale cress | nucleus | 80.17 | 69.66 |
| CDY57608 | Canola | nucleus | 43.02 | 64.17 |
| CDX67704 | Canola | nucleus | 43.58 | 63.41 |
| Solyc11g062060.1.1 | Tomato | nucleus | 44.97 | 61.69 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 49.72 | 57.23 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 51.96 | 55.69 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 49.44 | 54.8 |
| PGSC0003DMT400035408 | Potato | nucleus | 52.79 | 54.47 |
| GSMUA_AchrUn_... | Banana | plastid | 49.16 | 53.82 |
| CDX88959 | Canola | nucleus | 54.47 | 53.57 |
| CDX72006 | Canola | nucleus | 55.31 | 53.08 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 44.41 | 53.0 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 47.49 | 52.8 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 46.93 | 52.66 |
| CDY06083 | Canola | nucleus | 54.75 | 52.41 |
| KRH10191 | Soybean | nucleus, plastid | 49.72 | 51.59 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 48.32 | 50.73 |
| KRH24697 | Soybean | nucleus, plastid | 47.77 | 50.15 |
| KRH29701 | Soybean | nucleus | 47.77 | 50.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.77 | 49.71 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 50.84 | 49.46 |
| KRH23146 | Soybean | nucleus, plastid | 48.32 | 49.43 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 50.84 | 49.19 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 50.56 | 48.92 |
| CDY19385 | Canola | nucleus | 40.78 | 48.03 |
| CDY12025 | Canola | nucleus | 38.27 | 47.74 |
| CDX97995 | Canola | nucleus | 41.06 | 47.73 |
| CDY03134 | Canola | nucleus | 37.99 | 47.39 |
| Zm00001d036812_P001 | Maize | nucleus | 50.28 | 46.27 |
| EER88644 | Sorghum | nucleus, plastid | 51.12 | 45.3 |
| Zm00001d046774_P001 | Maize | nucleus | 50.0 | 44.97 |
| CDX93575 | Canola | nucleus | 41.62 | 44.21 |
| CDX95075 | Canola | nucleus | 41.62 | 44.08 |
| CDY26642 | Canola | nucleus | 36.31 | 43.92 |
| CDY22690 | Canola | nucleus | 40.22 | 42.73 |
| CDY06308 | Canola | nucleus | 39.94 | 42.43 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 50.84 | 40.9 |
| CDY09179 | Canola | nucleus | 19.27 | 21.3 |
| CDY26965 | Canola | nucleus | 20.67 | 20.22 |
| CDY26966 | Canola | nucleus | 21.23 | 20.21 |
| CDX74505 | Canola | nucleus | 20.67 | 19.68 |
| CDX98183 | Canola | nucleus | 20.67 | 19.68 |
| CDY31715 | Canola | nucleus | 20.67 | 19.68 |
| CDY69109 | Canola | nucleus | 20.39 | 19.62 |
| CDY12041 | Canola | nucleus | 22.07 | 19.32 |
| CDY09178 | Canola | nucleus | 19.83 | 19.24 |
| CDY03148 | Canola | nucleus | 21.23 | 17.63 |
| CDY46467 | Canola | nucleus | 21.51 | 15.78 |
| CDX91774 | Canola | nucleus | 21.79 | 15.73 |
Protein Annotations
| EnsemblPlants:CDY27556 | EnsemblPlantsGene:GSBRNA2T00038269001 | Gene3D:3.30.160.60 | GO:A0A078GQF9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF61 |
| PFscan:PS50157 | ProteinID:CDY27556 | ProteinID:CDY27556.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EDC6B9 | UniProt:A0A078GQF9 | MapMan:15.5.15 | : | : | : |
Description
BnaC01g32390DBnaC01g32390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQF9]
Coordinates
chrLK032206:+:320213..322275
Molecular Weight (calculated)
40253.6 Da
IEP (calculated)
7.132
GRAVY (calculated)
-0.774
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDPACIFSN GFLDNYDYSF NYSTSLSHIY NSNGSFYSSN TTKINPNSTS PDSPPLREAL PLLSLSPIHK HKAASVSHHE YYFMETTEQS STSNFLDHDL
101: GQCQETQHHD VTVDLHLGLT NLGGDAIACG GGGSSSSDAI LDSTDQEHHH DLHQDRHQYP EVEVTLVSDH DGHGGVQRGI HHHYWIPTPS QILMGPTQFS
201: CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LRLSCYCCAP GCKNNINHPR ARPLKDFRTL QTHYKRKHGA RPFACRRCGK AFAVKGDWRT
301: HEKNCGKLWY CSCGSDFKHK RSLKDHVKAF GNGHVPCFGN DCFGDHEDEA ASDVEHQE
101: GQCQETQHHD VTVDLHLGLT NLGGDAIACG GGGSSSSDAI LDSTDQEHHH DLHQDRHQYP EVEVTLVSDH DGHGGVQRGI HHHYWIPTPS QILMGPTQFS
201: CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LRLSCYCCAP GCKNNINHPR ARPLKDFRTL QTHYKRKHGA RPFACRRCGK AFAVKGDWRT
301: HEKNCGKLWY CSCGSDFKHK RSLKDHVKAF GNGHVPCFGN DCFGDHEDEA ASDVEHQE
001: MLFSTVLSHR TLYILTCPNT LIHSYTHPHI HAYLAFTGFL TQLHHLEISC LLLLFFSLSS LLKLMADPDC IFRNGYVDYY NYSFNYATSL SRIYNSHDSF
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
Arabidopsis Description
WIP4Zinc finger protein WIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W030]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.