Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028067.1-P | Field mustard | nucleus | 98.26 | 98.26 |
| CDY03134 | Canola | nucleus | 95.82 | 95.82 |
| AT1G34790.1 | Thale cress | nucleus | 83.28 | 78.88 |
| KRH18924 | Soybean | nucleus | 49.48 | 59.92 |
| VIT_18s0001g05860.t01 | Wine grape | nucleus | 55.75 | 58.61 |
| Solyc04g074320.1.1 | Tomato | nucleus | 55.4 | 58.24 |
| KRH16750 | Soybean | nucleus | 49.83 | 57.43 |
| CDY57608 | Canola | nucleus | 44.6 | 53.33 |
| CDX67704 | Canola | nucleus | 44.6 | 52.03 |
| CDY19385 | Canola | nucleus | 46.69 | 44.08 |
| CDX97995 | Canola | nucleus | 46.34 | 43.18 |
| CDY25224 | Canola | nucleus | 49.48 | 42.01 |
| CDY22834 | Canola | nucleus, plastid | 48.78 | 41.42 |
| CDY35565 | Canola | nucleus | 48.78 | 41.3 |
| CDY29624 | Canola | nucleus | 48.78 | 41.18 |
| CDY26642 | Canola | nucleus | 41.46 | 40.2 |
| CDY06390 | Canola | nucleus | 46.69 | 40.12 |
| CDX93575 | Canola | nucleus | 47.04 | 40.06 |
| CDX95075 | Canola | nucleus | 47.04 | 39.94 |
| CDY22690 | Canola | nucleus | 46.69 | 39.76 |
| CDX88959 | Canola | nucleus | 50.17 | 39.56 |
| CDY06083 | Canola | nucleus | 51.22 | 39.3 |
| CDY06308 | Canola | nucleus | 45.99 | 39.17 |
| CDX72006 | Canola | nucleus | 50.87 | 39.14 |
| CDY27556 | Canola | nucleus | 47.74 | 38.27 |
| CDY57920 | Canola | nucleus | 47.74 | 38.16 |
| PGSC0003DMT400079144 | Potato | nucleus | 54.36 | 32.7 |
| CDY09179 | Canola | nucleus | 23.0 | 20.37 |
| CDY26965 | Canola | nucleus | 23.69 | 18.58 |
| CDY69109 | Canola | nucleus | 23.34 | 18.01 |
| CDY26966 | Canola | nucleus | 23.34 | 17.82 |
| CDX98183 | Canola | nucleus | 23.34 | 17.82 |
| CDY31715 | Canola | nucleus | 23.34 | 17.82 |
| CDX74505 | Canola | nucleus | 23.34 | 17.82 |
| CDY09178 | Canola | nucleus | 21.95 | 17.07 |
| CDY12041 | Canola | nucleus | 23.34 | 16.38 |
| CDY03148 | Canola | nucleus | 23.0 | 15.31 |
| CDY46467 | Canola | nucleus | 23.69 | 13.93 |
| CDX91774 | Canola | nucleus | 23.69 | 13.71 |
Protein Annotations
| EnsemblPlants:CDY12025 | EnsemblPlantsGene:GSBRNA2T00060946001 | Gene3D:3.30.160.60 | GO:A0A078FCE8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:TT1-like | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF69 | PFscan:PS50157 | ProteinID:CDY12025 | ProteinID:CDY12025.1 | ScanProsite:PS00028 | SEG:seg |
| SUPFAM:SSF57667 | UniParc:UPI0004EF22F1 | UniProt:A0A078FCE8 | MapMan:15.5.15 | : | : |
Description
BnaAnng02100DBnaAnng02100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCE8]
Coordinates
chrLK032016:-:613149..614797
Molecular Weight (calculated)
32534.3 Da
IEP (calculated)
7.530
GRAVY (calculated)
-0.692
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCEIYSSSS SEIPRDHVQS LDLFPNITQN PNNNNTRIEP LPLIDRINLN SNLNLKPRPS YVGEGDDEVE DEEDVVVDVS LHIGLPGSGN SSNGKEIVTY
101: DAGKDIENEV SGKSYWIPTV DQIIIGFTHF SCHVCFKTFN RYNNLQMHMW GHGSQYRKGP ESLKGTQPRA MLGIPCYCCV EGCRNHIDHP RSKPLKDFRT
201: LQTHYKRKHG QKPYACRICG KLLAVKGDWR THEKNCGKRW VCVCGSDFKH KRSLKDHIKA FGPGHGSYPT DLFDEHCSHS SVSETLF
101: DAGKDIENEV SGKSYWIPTV DQIIIGFTHF SCHVCFKTFN RYNNLQMHMW GHGSQYRKGP ESLKGTQPRA MLGIPCYCCV EGCRNHIDHP RSKPLKDFRT
201: LQTHYKRKHG QKPYACRICG KLLAVKGDWR THEKNCGKRW VCVCGSDFKH KRSLKDHIKA FGPGHGSYPT DLFDEHCSHS SVSETLF
001: MESPPLYEIS SSSSSEKPRH HFQSLDLFPN LNQNSCINNT LIEPLPLIDR INLNSNLDLN PNPLYAEEGE QEEEEEEEED REVDVDLHIG LPGFGKPSND
101: AKQLKKRNGK EIATYDAGKG IENELSGKAY WIPAPEQILI GFTHFSCHVC FKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCRN
201: HIDHPRSKPL KDFRTLQTHY KRKHGHKPFS CRLCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGSGH GPYPTGLFEE QASNSSVSET
301: LFF
101: AKQLKKRNGK EIATYDAGKG IENELSGKAY WIPAPEQILI GFTHFSCHVC FKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCRN
201: HIDHPRSKPL KDFRTLQTHY KRKHGHKPFS CRLCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGSGH GPYPTGLFEE QASNSSVSET
301: LFF
Arabidopsis Description
TT1Protein TRANSPARENT TESTA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWG3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.