Factsheet for VIT_18s0001g05860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18924	Soybean	nucleus	56.41	64.98
KRH16750	Soybean	nucleus	56.78	62.25
Solyc04g074320.1.1	Tomato	nucleus	61.17	61.17
CDY03134	Canola	nucleus	58.61	55.75
CDY12025	Canola	nucleus	58.61	55.75
Bra028067.1-P	Field mustard	nucleus	58.24	55.4
AT1G34790.1	Thale cress	nucleus	61.17	55.12
VIT_01s0011g03100.t01	Wine grape	nucleus	51.65	51.27
VIT_06s0004g01870.t01	Wine grape	nucleus	54.21	44.31
VIT_08s0007g08070.t01	Wine grape	nucleus	54.21	42.9
VIT_13s0064g01060.t01	Wine grape	nucleus	53.85	42.86
VIT_06s0080g00270.t01	Wine grape	plastid	53.85	42.36
PGSC0003DMT400079144	Potato	nucleus	59.71	34.17
VIT_06s0061g00780.t01	Wine grape	nucleus	23.08	16.15
VIT_07s0141g00020.t01	Wine grape	vacuole	21.98	14.29
VIT_18s0072g00840.t01	Wine grape	nucleus	26.01	13.47

Protein Annotations

EntrezGene:100264302	wikigene:100264302	MapMan:15.5.15	Gene3D:3.30.160.60	UniProt:A5AQU8	EMBL:AM432487
ProteinID:CAN67026	ProteinID:CAN67026.1	ProteinID:CCB45575	ProteinID:CCB45575.1	EMBL:FN595227	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009813	InterPro:IPR013087	EntrezGene:LOC100264302
wikigene:LOC100264302	PFAM:PF12874	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF69
SMART:SM00355	SUPFAM:SSF57667	InterPro:TT1-like	UniParc:UPI000151F3EA	ArrayExpress:VIT_18s0001g05860	EnsemblPlantsGene:VIT_18s0001g05860
EnsemblPlants:VIT_18s0001g05860.t01	RefSeq:XP_002284131	RefSeq:XP_002284131.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

No Description!

Coordinates

chr18:+:4531169..4532101

Molecular Weight (calculated)

30531.5 Da

IEP (calculated)

8.794

GRAVY (calculated)

-0.622

Length

273 amino acids

Sequence
(BLAST)

001: MEPSDIPFSS NPSACSSSHD NIYNELLNLF PDTRPNSLEP LPLPSSLLCS PKAVPLEGNT KASNEDTGDV TVTLCIGLPD NKDGSKNAVD KRDSDIAATQ
101: YWIPTPAQIL IGFTHFSCHI CNKTFNRYNN LQMHMWGHGS QYRKGPESLK GTQPRAVLSI PCYCCTQGCK NNIDHPRAKP LKDFRTLQTH YKRKHGMKPF
201: MCRKCGKCLA VKGDWRTHEK NCGKRWLCAC GSDFKHKRSL KDHIKAFGSG HGPFPPPFEG VQLREDAVPF PFV

Best Arabidopsis Sequence Match ( AT1G34790.1 )
(BLAST)

001: MESPPLYEIS SSSSSEKPRH HFQSLDLFPN LNQNSCINNT LIEPLPLIDR INLNSNLDLN PNPLYAEEGE QEEEEEEEED REVDVDLHIG LPGFGKPSND
101: AKQLKKRNGK EIATYDAGKG IENELSGKAY WIPAPEQILI GFTHFSCHVC FKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCRN
201: HIDHPRSKPL KDFRTLQTHY KRKHGHKPFS CRLCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGSGH GPYPTGLFEE QASNSSVSET
301: LFF

Arabidopsis Description

TT1Protein TRANSPARENT TESTA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWG3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.