Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028067.1-P | Field mustard | nucleus | 96.86 | 96.86 |
| CDY12025 | Canola | nucleus | 95.82 | 95.82 |
| AT1G34790.1 | Thale cress | nucleus | 83.28 | 78.88 |
| KRH18924 | Soybean | nucleus | 48.78 | 59.07 |
| VIT_18s0001g05860.t01 | Wine grape | nucleus | 55.75 | 58.61 |
| Solyc04g074320.1.1 | Tomato | nucleus | 54.36 | 57.14 |
| KRH16750 | Soybean | nucleus | 49.13 | 56.63 |
| CDY57608 | Canola | nucleus | 43.9 | 52.5 |
| CDX67704 | Canola | nucleus | 43.9 | 51.22 |
| CDY19385 | Canola | nucleus | 45.99 | 43.42 |
| CDX97995 | Canola | nucleus | 45.64 | 42.53 |
| CDY25224 | Canola | nucleus | 49.13 | 41.72 |
| CDY35565 | Canola | nucleus | 49.13 | 41.59 |
| CDY29624 | Canola | nucleus | 49.13 | 41.47 |
| CDY22834 | Canola | nucleus, plastid | 48.43 | 41.12 |
| CDY06390 | Canola | nucleus | 46.34 | 39.82 |
| CDX93575 | Canola | nucleus | 46.69 | 39.76 |
| CDY22690 | Canola | nucleus | 46.69 | 39.76 |
| CDX95075 | Canola | nucleus | 46.69 | 39.65 |
| CDY26642 | Canola | nucleus | 40.77 | 39.53 |
| CDY06308 | Canola | nucleus | 45.99 | 39.17 |
| CDX88959 | Canola | nucleus | 48.78 | 38.46 |
| CDY06083 | Canola | nucleus | 49.83 | 38.24 |
| CDX72006 | Canola | nucleus | 49.48 | 38.07 |
| CDY27556 | Canola | nucleus | 47.39 | 37.99 |
| CDY57920 | Canola | nucleus | 47.39 | 37.88 |
| PGSC0003DMT400079144 | Potato | nucleus | 53.31 | 32.08 |
| CDY09179 | Canola | nucleus | 22.65 | 20.06 |
| CDY26965 | Canola | nucleus | 23.0 | 18.03 |
| CDY69109 | Canola | nucleus | 22.65 | 17.47 |
| CDY26966 | Canola | nucleus | 22.65 | 17.29 |
| CDX98183 | Canola | nucleus | 22.65 | 17.29 |
| CDY31715 | Canola | nucleus | 22.65 | 17.29 |
| CDX74505 | Canola | nucleus | 22.65 | 17.29 |
| CDY09178 | Canola | nucleus | 21.6 | 16.8 |
| CDY12041 | Canola | nucleus | 22.3 | 15.65 |
| CDY03148 | Canola | nucleus | 21.95 | 14.62 |
| CDY46467 | Canola | nucleus | 22.65 | 13.32 |
| CDX91774 | Canola | nucleus | 22.65 | 13.1 |
Protein Annotations
| EnsemblPlants:CDY03134 | EnsemblPlantsGene:GSBRNA2T00115549001 | GO:A0A078ER23 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:TT1-like | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF69 |
| PFscan:PS50157 | ProteinID:CDY03134 | ProteinID:CDY03134.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EED13E | MapMan:15.5.15 | : | : | : | : |
Description
BnaC06g08390D
Coordinates
chrLK031940:-:772592..774327
Molecular Weight (calculated)
32547.4 Da
IEP (calculated)
7.532
GRAVY (calculated)
-0.657
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCEIYSSSS SENPRDHFQF LDLFPNITQN PNNNNTLIEP LPLIDRINLN PNLNLKSRPS YVGEGDDEVE DEENVVVDVS LHIGLPGSGN SSNGKEIVTY
101: DAGKDIENEV SGKAYWIPTV DQIIIGFTHF SCHVCFKTFN RYNNLQMHMW GHGSQYRKGP ESLKGTQPRA MLGIPCFCCV EGCRNHIDHP RSKPLKDFRT
201: LQTHYKRKHG QKPYACRICG KLLAVKGDWR THEKNCGKRW VCVCGSDFKH KRSLKDHVKA FGPGHGSYPT DLFDEHASYS SVSETLF
101: DAGKDIENEV SGKAYWIPTV DQIIIGFTHF SCHVCFKTFN RYNNLQMHMW GHGSQYRKGP ESLKGTQPRA MLGIPCFCCV EGCRNHIDHP RSKPLKDFRT
201: LQTHYKRKHG QKPYACRICG KLLAVKGDWR THEKNCGKRW VCVCGSDFKH KRSLKDHVKA FGPGHGSYPT DLFDEHASYS SVSETLF
001: MESPPLYEIS SSSSSEKPRH HFQSLDLFPN LNQNSCINNT LIEPLPLIDR INLNSNLDLN PNPLYAEEGE QEEEEEEEED REVDVDLHIG LPGFGKPSND
101: AKQLKKRNGK EIATYDAGKG IENELSGKAY WIPAPEQILI GFTHFSCHVC FKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCRN
201: HIDHPRSKPL KDFRTLQTHY KRKHGHKPFS CRLCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGSGH GPYPTGLFEE QASNSSVSET
301: LFF
101: AKQLKKRNGK EIATYDAGKG IENELSGKAY WIPAPEQILI GFTHFSCHVC FKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCRN
201: HIDHPRSKPL KDFRTLQTHY KRKHGHKPFS CRLCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGSGH GPYPTGLFEE QASNSSVSET
301: LFF
Arabidopsis Description
TT1Protein TRANSPARENT TESTA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWG3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.