CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040971.1-P	Field mustard	nucleus	97.07	93.19
CDY03148	Canola	nucleus	87.29	82.83
CDY46467	Canola	nucleus	80.68	67.62
CDX91774	Canola	nucleus	80.93	66.73
AT1G34370.1	Thale cress	nucleus	76.04	62.32
Solyc06g065440.1.1	Tomato	cytosol	47.19	54.99
GSMUA_Achr5P01170_001	Banana	nucleus	48.41	50.38
PGSC0003DMT400067092	Potato	nucleus	52.57	49.65
Solyc11g017140.1.1	Tomato	nucleus	56.48	47.63
VIT_18s0072g00840.t01	Wine grape	nucleus	61.37	47.63
KRH08551	Soybean	nucleus, plastid	58.44	45.87
GSMUA_Achr6P18840_001	Banana	nucleus	45.48	45.04
PGSC0003DMT400023881	Potato	nucleus	55.99	44.64
KXG33778	Sorghum	nucleus	53.3	42.0
Zm00001d012260_P001	Maize	nucleus	52.81	41.62
Zm00001d042686_P001	Maize	nucleus	52.08	41.12
Os01t0871200-03	Rice	nucleus	51.59	40.42
TraesCS3A01G381900.1	Wheat	nucleus	50.12	39.58
TraesCS3D01G375000.1	Wheat	nucleus	49.88	39.23
TraesCS3B01G414500.1	Wheat	nucleus	49.39	38.85
CDY09179	Canola	nucleus	27.38	34.57
CDY26965	Canola	nucleus	28.36	31.69
CDY69109	Canola	nucleus	28.12	30.91
CDX74505	Canola	nucleus	28.36	30.85
CDX98183	Canola	nucleus	28.36	30.85
CDY31715	Canola	nucleus	28.36	30.85
CDY26966	Canola	nucleus	28.12	30.59
CDY09178	Canola	nucleus	27.38	30.35
CDY57608	Canola	nucleus	17.11	29.17
CDX67704	Canola	nucleus	17.36	28.86
CDY35565	Canola	nucleus	20.05	24.19
CDY29624	Canola	nucleus	19.8	23.82
CDY22834	Canola	nucleus, plastid	19.56	23.67
CDY25224	Canola	nucleus	19.56	23.67
CDY19385	Canola	nucleus	17.36	23.36
CDY06390	Canola	nucleus	19.07	23.35
CDY12025	Canola	nucleus	16.38	23.34
CDX97995	Canola	nucleus	17.11	22.73
CDY03134	Canola	nucleus	15.65	22.3
CDY26642	Canola	nucleus	16.14	22.3
CDY27556	Canola	nucleus	19.32	22.07
CDY57920	Canola	nucleus	19.32	22.01
CDX93575	Canola	nucleus	18.09	21.96
CDX95075	Canola	nucleus	18.09	21.89
CDX72006	Canola	nucleus	19.07	20.91
CDX88959	Canola	nucleus	18.58	20.88
CDY06083	Canola	nucleus	19.07	20.86
CDY22690	Canola	nucleus	16.38	19.88
CDY06308	Canola	nucleus	16.38	19.88

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:A0A078FFN8	UniProt:A0A078FFN8	EnsemblPlants:CDY12041	ProteinID:CDY12041
ProteinID:CDY12041.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00060982001	InterPro:IPR013087
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0004EECEB6	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

BnaAnng02260DBnaAnng02260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFN8]

Coordinates

chrLK032016:-:835591..837399

Molecular Weight (calculated)

44850.0 Da

IEP (calculated)

7.442

GRAVY (calculated)

-0.534

Length

409 amino acids

Sequence
(BLAST)

001: MAMEEKEEPN LHVFKASSSG KDNNNNNGGQ ASVQGVKAQA WDPRTMLCNL SFMEQKIHEL QGLVHLILSR NGQLQDEQQQ LITADLTSII IQLISTAGTL
101: FPFPREANNL ASQTLNNGGA SQELEDDAEE GENLPPGSYE IKQLEKEEIL APHTNFCTIC GKGFKRDANL RMHMRGHGDQ YKTPAALAKP PTKETLPVSD
201: EPMLIKRYSC PFPGCKRNKD HKRFQPLKTI LCVKNHYKRT HCDKSFTCSR CHTKKFSVIA DLKTHEKHCG QNKWLCSCGT TFSRKDKLFG HIALFQGHTP
301: AIPLEDTKPS AAASSQRGSS GCGNNNNNAA MVSFSLGSAA NANQETSQPC FMDGKISFEE SFSPLSFDTC NFGGFPRSIF DDSFQMLISS ACGCSPINGG
401: VGSVSDTSL

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.