Factsheet for PGSC0003DMT400023881

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g017140.1.1	Tomato	nucleus	91.03	96.29
PGSC0003DMT400067092	Potato	nucleus	60.23	71.36
VIT_18s0072g00840.t01	Wine grape	nucleus	65.11	63.38
KRG91822	Soybean	nucleus, plastid	57.12	57.56
KRH34957	Soybean	nucleus, plastid	56.73	57.4
CDY03148	Canola	nucleus	47.95	57.08
CDY12041	Canola	nucleus	44.64	55.99
Bra040971.1-P	Field mustard	nucleus	46.0	55.4
CDY46467	Canola	nucleus	52.63	55.33
Bra036750.1-P	Field mustard	nucleus	52.44	54.79
CDX91774	Canola	nucleus	52.63	54.44
AT1G34370.1	Thale cress	nucleus	52.83	54.31
GSMUA_Achr5P01170_001	Banana	nucleus	41.52	54.2
KRH08551	Soybean	nucleus, plastid	54.78	53.93
GSMUA_Achr6P18840_001	Banana	nucleus	39.38	48.91
KXG33778	Sorghum	nucleus	49.12	48.55
Zm00001d012260_P001	Maize	nucleus	48.73	48.17
Zm00001d042686_P001	Maize	nucleus	48.15	47.68
Os01t0871200-03	Rice	nucleus	48.34	47.51
TraesCS3A01G381900.1	Wheat	nucleus	47.37	46.91
TraesCS3B01G414500.1	Wheat	nucleus	47.17	46.54
TraesCS3D01G375000.1	Wheat	nucleus	47.17	46.54
PGSC0003DMT400008898	Potato	extracellular, nucleus	27.49	38.32
PGSC0003DMT400001105	Potato	nucleus	23.2	37.42
PGSC0003DMT400017556	Potato	nucleus	10.33	37.06
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	10.14	33.99
PGSC0003DMT400018308	Potato	nucleus, plastid	15.01	23.62
PGSC0003DMT400077822	Potato	nucleus	14.43	23.27
PGSC0003DMT400035408	Potato	nucleus	15.4	22.77
PGSC0003DMT400079144	Potato	nucleus	13.26	14.26

Protein Annotations

EnsemblPlants:PGSC0003DMT400023881	EnsemblPlantsGene:PGSC0003DMG400009234	EntrezGene:102591806	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF41
PFscan:PS50157	PGSC:PGSC0003DMG400009234	RefSeq:XP_006351163.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI000295EF1B	UniProt:M1AJ35	MapMan:15.5.15	:	:

Description

C2H2L domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400009234]

Coordinates

chr11:+:8966433..8969519

Molecular Weight (calculated)

57353.0 Da

IEP (calculated)

6.658

GRAVY (calculated)

-0.768

Length

513 amino acids

Sequence
(BLAST)

001: MDPDDGLSED PWIKSSSSGN ELLKIMPSDN HSFTNLNLHA QKWEGSSYLD QQNRIEQQFS GFAKPKHTSE MDQQGHQRNE NHDTTRIHDW DPRALLNNLS
101: FLEQKIHQLQ ELVHLIVGRR GQDGVQGNDL IVQQQQLITA DLTSIIVQLI STAGSLLPTM KHTLSSAIPA ASQLGQAGGV TVSSTAGTSA GGLTCNDSVA
201: KVEDQSNHVD QLRDCGIEHN HAADEHELKD EDEAEEEENL PPGSYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP AALAKPHKEP
301: SSEPILIKRY SCPYVGCKRN KEHKKFQPLK TILCVKNHYK RTHCEKAYTC SRCNIKKFSV IADLKTHEKH CGKDKWLCSC GTTFSRKDKL FGHISLFQGH
401: TPAVSPDETK GSAGTSDRGQ TSEVTMKARQ ENYKVNASHG NEFQKPGVLK ECPYNPSSYY SPLNFDTSNL NGFQEFPRPP FDESDSSFSF LLSGSCEYPP
501: HKAAKFMSSS EME

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.