CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012260_P001	Maize	nucleus	95.95	95.95
Zm00001d042686_P001	Maize	nucleus	92.49	92.66
Os01t0871200-03	Rice	nucleus	79.19	78.74
TraesCS3D01G375000.1	Wheat	nucleus	78.61	78.46
TraesCS3A01G381900.1	Wheat	nucleus	77.84	77.99
TraesCS3B01G414500.1	Wheat	nucleus	77.84	77.69
GSMUA_Achr5P01170_001	Banana	nucleus	45.86	60.56
Solyc06g065440.1.1	Tomato	cytosol	38.54	56.98
GSMUA_Achr6P18840_001	Banana	nucleus	44.32	55.69
CDY12041	Canola	nucleus	42.0	53.3
Bra040971.1-P	Field mustard	nucleus	43.55	53.05
PGSC0003DMT400067092	Potato	nucleus	43.55	52.19
CDY03148	Canola	nucleus	42.97	51.74
VIT_18s0072g00840.t01	Wine grape	nucleus	52.41	51.61
KRH34957	Soybean	nucleus, plastid	49.9	51.08
Solyc11g017140.1.1	Tomato	nucleus	47.59	50.93
KRG91822	Soybean	nucleus, plastid	49.71	50.69
CDY46467	Canola	nucleus	46.63	49.59
KRH08551	Soybean	nucleus, plastid	49.71	49.52
PGSC0003DMT400023881	Potato	nucleus	48.55	49.12
Bra036750.1-P	Field mustard	nucleus	46.44	49.08
CDX91774	Canola	nucleus	46.82	48.99
AT1G34370.1	Thale cress	nucleus	46.82	48.7
KXG37177	Sorghum	nucleus	33.72	44.19
OQU85186	Sorghum	nucleus	22.74	32.42
OQU80698	Sorghum	nucleus	24.66	30.12
EER98623	Sorghum	plastid	12.91	21.27
EES03920	Sorghum	plastid	15.99	20.6
EER96535	Sorghum	nucleus	14.07	19.73
EES18308	Sorghum	plastid	15.22	19.6
EES15412	Sorghum	nucleus	15.61	18.93
EER96965	Sorghum	cytosol, mitochondrion, nucleus, plastid	15.99	18.4
EER88644	Sorghum	nucleus, plastid	13.87	17.82

Protein Annotations

MapMan:15.5.15	UniProt:A0A1B6Q790	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987
GO:GO:0010044	GO:GO:0010447	InterPro:IPR013087	EnsemblPlants:KXG33778	ProteinID:KXG33778	ProteinID:KXG33778.1
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF41	SMART:SM00355	EnsemblPlantsGene:SORBI_3003G370700
SUPFAM:SSF57667	UniParc:UPI0001C80BA1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:68677034..68680283

Molecular Weight (calculated)

56977.8 Da

IEP (calculated)

5.896

GRAVY (calculated)

-0.643

Length

519 amino acids

Sequence
(BLAST)

001: MEGRMTSLEA AMKASSSMAS SMARNADPDH QTLRSNSVEQ FYFPRPGQSL PGIPPFFGPP SSSLYPPNDN EAKFGSQFES NPSQNTDWDP QAIVSNLTFL
101: EQKIKQVKDI VQSMNNRENQ VAGGSSELAA KQQLITADLT SIIIQLISTA GSLLPSMKNP LLSSNPAVRQ LGNTLGSPMG FGMNANQRPS VDSKTDIPDT
201: GKTSDYDELM NSLNTAQDER DELIKCPNLC GGEGSEPTPM EDHDVKESDD GGEGENLPPG SYVVLQLEKE EILAPHTHFC LICGKGFKRD ANLRMHMRGH
301: GDEYKTPAAL AKPTKDSGAD HAPVTRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRSH CDKSYTCSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT
401: FSRKDKLFGH VALFQGHTPA LPMEDVKVSE ASELPQDSEP TNEMARSMVY SFPSSSSDGI SNLDMKMADD VRGYFSPLNF DPCFGALDDF TRPGFDISEN
501: PFSFLPSGSC SYGQQNGDS

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.