CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046774_P001	Maize	nucleus	83.91	85.18
Zm00001d036812_P001	Maize	nucleus	81.68	84.83
PGSC0003DMT400017556	Potato	nucleus	27.72	78.32
TraesCS7B01G304000.1	Wheat	nucleus	69.31	75.68
TraesCS7D01G397800.1	Wheat	nucleus	68.81	75.14
TraesCS7A01G404400.1	Wheat	nucleus	68.32	75.0
CDY57608	Canola	nucleus	40.84	68.75
Bra003295.1-P	Field mustard	nucleus	41.34	67.89
CDX67704	Canola	nucleus	41.34	67.89
Solyc11g062060.1.1	Tomato	nucleus	42.57	65.9
Bra007346.1-P	Field mustard	nucleus	47.03	61.89
Os06t0612300-01	Rice	endoplasmic reticulum, vacuole	67.82	61.57
VIT_06s0004g01870.t01	Wine grape	nucleus	50.25	60.78
Solyc01g087050.2.1	Tomato	nucleus	44.8	60.74
PGSC0003DMT400077822	Potato	nucleus	47.28	60.06
VIT_08s0007g08070.t01	Wine grape	nucleus	51.24	60.0
GSMUA_Achr3P11870_001	Banana	nucleus	50.25	59.71
CDX72006	Canola	nucleus	54.21	58.71
CDY06083	Canola	nucleus	54.21	58.56
Bra014612.1-P	Field mustard	nucleus, plastid	52.72	58.52
CDX88959	Canola	nucleus	52.72	58.52
PGSC0003DMT400035408	Potato	nucleus	50.0	58.21
KRG95308	Soybean	nucleus, plastid	50.0	57.88
AT3G57670.1	Thale cress	nucleus	53.71	56.66
KRH66988	Soybean	nucleus	50.0	56.42
VIT_13s0064g01060.t01	Wine grape	nucleus	47.52	55.98
KRH24697	Soybean	nucleus, plastid	47.03	55.72
KRH29701	Soybean	nucleus	46.78	55.43
KRH10191	Soybean	nucleus, plastid	46.78	54.78
KRH71956	Soybean	nucleus, plastid	50.0	54.45
KRH23146	Soybean	nucleus, plastid	47.03	54.29
CDY06390	Canola	nucleus	44.06	53.29
KRH27491	Soybean	nucleus, plastid	46.04	52.84
AT1G51220.1	Thale cress	nucleus	44.06	52.82
EER98623	Sorghum	plastid	41.09	52.7
CDY22834	Canola	nucleus, plastid	43.81	52.37
KRH20837	Soybean	nucleus, plastid	46.04	52.1
CDY25224	Canola	nucleus	43.56	52.07
Bra030450.1-P	Field mustard	nucleus	43.81	52.06
CDY29624	Canola	nucleus	43.56	51.76
Bra018902.1-P	Field mustard	plastid	43.07	51.63
KRH33045	Soybean	nucleus, plastid	49.26	51.55
Bra023918.1-P	Field mustard	nucleus	45.54	51.25
CDY57920	Canola	nucleus	45.54	51.25
CDY27556	Canola	nucleus	45.3	51.12
CDY35565	Canola	nucleus	42.82	51.03
KRH43510	Soybean	nucleus, plastid	43.56	50.87
Bra031239.1-P	Field mustard	nucleus	44.8	50.42
KRH13927	Soybean	nucleus, plastid	42.08	49.71
EES15412	Sorghum	nucleus	49.75	46.96
EER96965	Sorghum	cytosol, mitochondrion, nucleus, plastid	50.0	44.79
Solyc03g059270.2.1	Tomato	nucleus	37.87	44.74
AT3G20880.1	Thale cress	nucleus	44.8	43.93
EES03920	Sorghum	plastid	40.1	40.2
EES18308	Sorghum	plastid	39.6	39.7
EER96535	Sorghum	nucleus	36.14	39.46
KXG37177	Sorghum	nucleus	19.8	20.2
OQU85186	Sorghum	nucleus	16.34	18.13
OQU80698	Sorghum	nucleus	18.32	17.41
KXG33778	Sorghum	nucleus	17.82	13.87

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8067642	UniProt:C5Z5T1	EnsemblPlants:EER88644	ProteinID:EER88644
ProteinID:EER88644.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	PFAM:PF00096
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF61	SMART:SM00355	EnsemblPlantsGene:SORBI_3010G190400
SUPFAM:SSF57667	UniParc:UPI0001A89462	RefSeq:XP_002437277.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:53173542..53180148

Molecular Weight (calculated)

43782.6 Da

IEP (calculated)

7.042

GRAVY (calculated)

-0.766

Length

404 amino acids

Sequence
(BLAST)

001: MGDPYTNFLR GYYSHFPPSN APPVTSFPSS YASSYLHHPP PPPSPPIREA LPLLSNLTPS SSSATNHHHH HGGGDVQDHK DCCKRATSCS DDQEAADQAA
101: AGEVTVALHI GLPSPSPSDS AADGGDSQEP AAAEGRSQLQ QQEGGGGEEE EEEEGEEDAA MAVGCASIGI GRLTKGQYWI PTPSQILIGP TQFSCPVCYK
201: TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAAGCRNNI DHPRARPLKD FRTLQTHYRR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG
301: KLWYCACGSD FKHKRSLKDH IRAFGRGHAA CGIDCFDDLD DDDRDPSSEV DHAAAAAANN TTTTTSSAAA ANAQAQHHHH HSVWKPPPPP PLSSSSRGSG
401: DPLL

Best Arabidopsis Sequence Match ( AT3G57670.1 )
(BLAST)

001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK

Arabidopsis Description

WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.