Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22834 | Canola | nucleus, plastid | 86.35 | 86.09 |
| Bra018902.1-P | Field mustard | plastid | 85.16 | 85.16 |
| CDY35565 | Canola | nucleus | 85.46 | 84.96 |
| CDY25224 | Canola | nucleus | 85.16 | 84.91 |
| CDY29624 | Canola | nucleus | 85.46 | 84.71 |
| Bra030450.1-P | Field mustard | nucleus | 85.46 | 84.71 |
| Solyc11g062060.1.1 | Tomato | nucleus | 49.26 | 63.6 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 55.49 | 60.13 |
| AT3G20880.1 | Thale cress | nucleus | 72.11 | 58.98 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 54.6 | 56.97 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 55.79 | 56.29 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 53.12 | 55.59 |
| GSMUA_AchrUn_... | Banana | plastid | 53.41 | 55.05 |
| PGSC0003DMT400035408 | Potato | nucleus | 56.38 | 54.76 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 51.63 | 54.55 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 48.37 | 54.33 |
| KRH10191 | Soybean | nucleus, plastid | 54.6 | 53.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.71 | 52.62 |
| KRH29701 | Soybean | nucleus | 51.93 | 51.32 |
| KRH24697 | Soybean | nucleus, plastid | 51.93 | 51.32 |
| KRH23146 | Soybean | nucleus, plastid | 53.12 | 51.14 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 51.63 | 51.03 |
| AT3G57670.1 | Thale cress | nucleus | 57.86 | 50.91 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 52.82 | 48.37 |
| AT1G13290.1 | Thale cress | nucleus | 43.03 | 48.01 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 52.52 | 47.84 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 52.52 | 47.84 |
| AT1G34790.1 | Thale cress | nucleus | 42.43 | 47.19 |
| Zm00001d036812_P001 | Maize | nucleus | 52.52 | 45.5 |
| Zm00001d046774_P001 | Maize | nucleus | 53.41 | 45.23 |
| EER88644 | Sorghum | nucleus, plastid | 52.82 | 44.06 |
| AT1G08290.1 | Thale cress | nucleus | 41.84 | 41.84 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 54.01 | 40.9 |
| AT5G22890.1 | Thale cress | nucleus | 21.36 | 19.3 |
| AT1G34370.1 | Thale cress | nucleus | 22.26 | 15.03 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:841545 | UniProt:A0A178WMC8 | ProteinID:AAD30636.1 | ProteinID:AEE32638.1 | EMBL:AJ311810 |
| ArrayExpress:AT1G51220 | EnsemblPlantsGene:AT1G51220 | RefSeq:AT1G51220 | TAIR:AT1G51220 | RefSeq:AT1G51220-TAIR-G | EnsemblPlants:AT1G51220.1 |
| TAIR:AT1G51220.1 | Unigene:At.37870 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 |
| InterPro:IPR013087 | RefSeq:NP_175533.1 | ProteinID:OAP18663.1 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF61 | UniProt:Q8W031 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00000AA762 | Symbol:WIP5 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
WIP5Zinc finger protein WIP5 [Source:UniProtKB/Swiss-Prot;Acc:Q8W031]
Coordinates
chr1:-:18989751..18992149
Molecular Weight (calculated)
38240.3 Da
IEP (calculated)
6.964
GRAVY (calculated)
-0.845
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPACSNLF NNGCDHNSFN YSTSLSYIYN SHGSYYYSNT TNPNYINHTH TTSTSPNSPP LREALPLLSL SPIRHQEQQD QHYFMDTHQI SSSNFLDDPL
101: VTVDLHLGLP NYGVGESIRS NIAPDATTDE QDQDHDRGVE VTVESHLDDD DDHHGDLHRG HHYWIPTPSQ ILIGPTQFTC PLCFKTFNRY NNMQMHMWGH
201: GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGSK PFACRMCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR
301: SLKDHVKAFG NGHVPCGIDS FGGDHEDYYD AASDIEQ
101: VTVDLHLGLP NYGVGESIRS NIAPDATTDE QDQDHDRGVE VTVESHLDDD DDHHGDLHRG HHYWIPTPSQ ILIGPTQFTC PLCFKTFNRY NNMQMHMWGH
201: GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGSK PFACRMCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR
301: SLKDHVKAFG NGHVPCGIDS FGGDHEDYYD AASDIEQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.