Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P01560_001 | Banana | nucleus | 81.11 | 81.37 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 74.61 | 77.49 |
| Solyc11g062060.1.1 | Tomato | nucleus | 55.42 | 68.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 72.14 | 67.73 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 62.54 | 67.33 |
| GSMUA_AchrUn_... | Banana | plastid | 68.11 | 67.28 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 66.25 | 67.08 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 70.28 | 66.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 66.87 | 66.06 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 66.56 | 64.37 |
| GSMUA_Achr3P11870_001 | Banana | nucleus | 67.49 | 64.12 |
| PGSC0003DMT400035408 | Potato | nucleus | 65.94 | 61.38 |
| GSMUA_Achr4P06350_001 | Banana | nucleus | 57.28 | 59.68 |
| GSMUA_Achr9P22340_001 | Banana | nucleus | 66.56 | 58.9 |
| GSMUA_Achr11P... | Banana | nucleus | 40.25 | 58.04 |
| KRH10191 | Soybean | nucleus, plastid | 61.61 | 57.68 |
| KRH23146 | Soybean | nucleus, plastid | 61.3 | 56.57 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 61.92 | 55.4 |
| KRH29701 | Soybean | nucleus | 58.2 | 55.13 |
| KRH24697 | Soybean | nucleus, plastid | 57.89 | 54.84 |
| AT1G51220.1 | Thale cress | nucleus | 56.97 | 54.6 |
| CDY06390 | Canola | nucleus | 55.42 | 53.59 |
| Bra030450.1-P | Field mustard | nucleus | 56.35 | 53.53 |
| CDY35565 | Canola | nucleus | 56.04 | 53.39 |
| CDY22834 | Canola | nucleus, plastid | 55.73 | 53.25 |
| CDY25224 | Canola | nucleus | 55.42 | 52.96 |
| CDY29624 | Canola | nucleus | 55.73 | 52.94 |
| Bra018902.1-P | Field mustard | plastid | 55.11 | 52.82 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 38.7 | 52.74 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 43.65 | 50.54 |
| Bra031239.1-P | Field mustard | nucleus | 55.73 | 50.14 |
| Bra023918.1-P | Field mustard | nucleus | 55.73 | 50.14 |
| CDY57920 | Canola | nucleus | 55.73 | 50.14 |
| CDY27556 | Canola | nucleus | 54.8 | 49.44 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 41.49 | 47.69 |
| AT3G20880.1 | Thale cress | nucleus | 55.42 | 43.45 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 42.11 | 31.55 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 20.43 | 23.49 |
| GSMUA_Achr11P... | Banana | nucleus | 21.36 | 20.29 |
| GSMUA_Achr10P... | Banana | nucleus | 23.84 | 19.35 |
| GSMUA_Achr10P... | Banana | nucleus | 20.12 | 18.52 |
| GSMUA_Achr5P01170_001 | Banana | nucleus | 21.98 | 18.07 |
| GSMUA_Achr6P18840_001 | Banana | nucleus | 21.67 | 16.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P03850_001 | EnsemblPlants:GSMUA_Achr3T03850_001 | EnsemblPlantsGene:GSMUA_Achr3G03850_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF98 | PFAM:PF00096 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0002953FF7 | UniProt:M0SBK3 | MapMan:15.5.15 | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G03850_001]
Coordinates
chr3:-:2499026..2501519
Molecular Weight (calculated)
36821.2 Da
IEP (calculated)
7.368
GRAVY (calculated)
-0.860
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPYTNFSR GFYNHYPFTS TPPPPPVATQ SYSFITHSYT SSFLPRHPPS PPLREALPLL SLSPTRHREE EEEEEEEEEE DTSCSASAEG AKNKAARIED
101: EADDEVDAVT VALHIGLPSP GAVDLISRLP STSEDHRRLN KGQYWIPTPS QILIGPTQFS CPVCYKTFNR YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM
201: LRLPCYCCAP GCRNNIDHPR SKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVKGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GRGHAAYGIN
301: CLEEEDDPSS EIEQDCHQPH EQR
101: EADDEVDAVT VALHIGLPSP GAVDLISRLP STSEDHRRLN KGQYWIPTPS QILIGPTQFS CPVCYKTFNR YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM
201: LRLPCYCCAP GCRNNIDHPR SKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVKGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GRGHAAYGIN
301: CLEEEDDPSS EIEQDCHQPH EQR
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.