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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr6P21380_001 Banana nucleus 71.17 84.39
PGSC0003DMT400096573 Potato cytosol, mitochondrion, nucleus, peroxisome 37.37 68.63
VIT_01s0011g03100.t01 Wine grape nucleus 56.23 57.45
GSMUA_Achr11P... Banana nucleus 43.77 54.91
TraesCS5B01G177600.1 Wheat nucleus, plastid 59.79 53.16
KRH34760 Soybean nucleus 50.89 52.38
GSMUA_Achr5P09960_001 Banana endoplasmic reticulum, nucleus, plastid 79.36 51.74
KRG92027 Soybean nucleus 50.18 51.46
Solyc05g009770.1.1 Tomato nucleus 50.89 50.0
AT1G13290.1 Thale cress nucleus 52.67 49.01
TraesCS5D01G184400.1 Wheat nucleus 60.85 48.17
CDY19385 Canola nucleus 51.96 48.03
TraesCS5A01G179800.1 Wheat nucleus 60.5 47.89
Bra019822.1-P Field mustard nucleus 52.31 47.73
CDX97995 Canola nucleus 52.31 47.73
Zm00001d020037_P001 Maize nucleus 62.99 47.07
EER96535 Sorghum nucleus 61.92 47.03
KRH75477 Soybean nucleus 55.16 46.69
Zm00001d005566_P001 Maize nucleus 61.57 45.65
KRH70598 Soybean nucleus 54.09 45.51
GSMUA_Achr5P26210_001 Banana nucleus 44.13 44.44
Os09t0307400-00 Rice nucleus 61.92 44.16
CDY26642 Canola nucleus 45.91 43.58
GSMUA_Achr4P01560_001 Banana nucleus 48.04 41.93
GSMUA_Achr9P12600_001 Banana nucleus 46.26 41.8
GSMUA_Achr8P25650_001 Banana nucleus, plastid 44.48 41.67
GSMUA_Achr3P03850_001 Banana plastid 47.69 41.49
GSMUA_Achr6P03470_001 Banana nucleus 46.62 41.07
GSMUA_AchrUn_... Banana nucleus 47.33 40.67
GSMUA_AchrUn_... Banana plastid 45.55 39.14
GSMUA_Achr3P11050_001 Banana cytosol, nucleus, plastid 47.33 39.0
GSMUA_Achr3P11870_001 Banana nucleus 46.98 38.82
GSMUA_AchrUn_... Banana nucleus 46.62 38.08
GSMUA_Achr1P16530_001 Banana nucleus 46.26 36.01
GSMUA_Achr9P22340_001 Banana nucleus 45.55 35.07
GSMUA_Achr4P06350_001 Banana nucleus 38.43 34.84
GSMUA_Achr1P15330_001 Banana cytosol 21.35 21.35
GSMUA_Achr11P... Banana nucleus 22.78 18.82
GSMUA_Achr5P01170_001 Banana nucleus 23.49 16.79
GSMUA_Achr10P... Banana nucleus 23.13 16.33
GSMUA_Achr6P18840_001 Banana nucleus 23.49 15.98
GSMUA_Achr10P... Banana nucleus 19.57 15.67
Protein Annotations
EnsemblPlants:GSMUA_Achr6P01410_001EnsemblPlants:GSMUA_Achr6T01410_001EnsemblPlantsGene:GSMUA_Achr6G01410_001Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676
GO:GO:0005488InterPro:IPR013087InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typePANTHER:PTHR10593PANTHER:PTHR10593:SF52
PFscan:PS50157SEG:segSUPFAM:SSF57667UniParc:UPI0002955256UniProt:M0T389MapMan:15.5.15
Description
Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G01410_001]
Coordinates
chr6:+:923668..924694
Molecular Weight (calculated)
31402.6 Da
IEP (calculated)
8.104
GRAVY (calculated)
-0.811
Length
281 amino acids
Sequence
(BLAST)
001: MFSKGGTSLS SKTNDEEEDR SVLLLSLWPP GCQGTPSSCS SPASSSCSSS TSTSVASSRL HTSFIQQQQH GVATTAAGFN PVPRQYWIPS PAEILIGTTQ
101: FSCTVCNKTF NRYNNMQQMH MWGHGSQYRR GSESLRGVTR QVPSPSLLKL PCYCCAEGCK NNIEHPRSRP LKDFRTLQTH YKRKHGARPY ACRRCGKAFA
201: VRGDWRTHEK NCGKLWFCIC GSDFKHKRSL KDHVRSFGSG HAPHLVETMS VDEEEEDEVE EDGEDGDEEG NGDSVHRNRL H
Best Arabidopsis Sequence Match ( AT1G08290.1 )
(BLAST)
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Arabidopsis Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.