Factsheet for TraesCS5A01G179800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G184400.1	Wheat	nucleus	97.75	97.75
TraesCS5B01G177600.1	Wheat	nucleus, plastid	86.48	97.15
EER96535	Sorghum	nucleus	75.77	72.7
Zm00001d020037_P001	Maize	nucleus	76.62	72.34
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	29.01	67.32
Os09t0307400-00	Rice	nucleus	74.65	67.26
Zm00001d005566_P001	Maize	nucleus	69.3	64.91
GSMUA_Achr6P01410_001	Banana	nucleus	47.89	60.5
VIT_01s0011g03100.t01	Wine grape	nucleus	43.94	56.73
KRH34760	Soybean	nucleus	41.13	53.48
Solyc05g009770.1.1	Tomato	nucleus	42.25	52.45
KRG92027	Soybean	nucleus	39.72	51.46
AT1G13290.1	Thale cress	nucleus	43.38	50.99
CDY19385	Canola	nucleus	42.82	50.0
Bra019822.1-P	Field mustard	nucleus	43.1	49.68
CDX97995	Canola	nucleus	43.1	49.68
KRH75477	Soybean	nucleus	46.2	49.4
KRH70598	Soybean	nucleus	45.35	48.2
CDY26642	Canola	nucleus	39.44	47.3
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	54.93	45.24
TraesCS1A01G276800.1	Wheat	nucleus, plastid	41.97	39.31
TraesCS5A01G175400.1	Wheat	nucleus	33.8	38.96
TraesCS7A01G404400.1	Wheat	nucleus	38.59	37.23
TraesCS5A01G263200.1	Wheat	nucleus	37.75	32.6
TraesCS3A01G371700.1	Wheat	cytosol, plastid	37.18	30.91
TraesCS6A01G201100.1	Wheat	nucleus	19.44	18.7
TraesCS1A01G060200.1	Wheat	nucleus	20.0	18.49
TraesCS4A01G352700.1	Wheat	nucleus	18.87	16.03
TraesCS3A01G381900.1	Wheat	nucleus	19.15	13.13

Protein Annotations

EnsemblPlants:TraesCS5A01G179800.1	EnsemblPlantsGene:TraesCS5A01G179800	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF52	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr5A:-:378271677..378272863

Molecular Weight (calculated)

37970.1 Da

IEP (calculated)

7.259

GRAVY (calculated)

-0.548

Length

355 amino acids

Sequence
(BLAST)

001: MHSYRAMHPH PHPYHTAPAP PTKMASGGHG GATEDDDQSM LLLSLWPPGH HHDAAASSSA CSSHSVATAA HSTASSPWFN PSHVYHGCGV GGGGGGGGSG
101: SFLFHEQDPN VSVSLSIAPP SPCGANLAPC GGSFAAPVAP PSAATAGGNQ VPSQYWIPSA AEILVGSTQF SCAVCNKSFN RFNNMQMHMW GHGSQYRKGS
201: ESLRGAVTVG TAAPPPSLMR LPCYCCAEGC RNNIDHPRAR PLKDFRTLQT HYRRKHGARP YACRRCGKRF AVRGDWRTHE KNCGKLWFCV CGSDFKHKRS
301: LKDHVRSFGG GHAPHIIESV TVDEDEDEDD EHDDGDLHLY DENGNAGDGS DMVLL

Best Arabidopsis Sequence Match ( AT1G13290.1 )
(BLAST)

001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY

Arabidopsis Description

WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.