Factsheet for VIT_01s0011g03100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	42.91	77.12
KRH34760	Soybean	nucleus	64.36	64.84
KRG92027	Soybean	nucleus	62.55	62.77
GSMUA_Achr6P21380_001	Banana	nucleus	53.82	62.45
Solyc05g009770.1.1	Tomato	nucleus	63.64	61.19
KRH70598	Soybean	nucleus	69.82	57.48
AT1G13290.1	Thale cress	nucleus	62.91	57.28
KRH75477	Soybean	nucleus	69.09	57.23
CDY19385	Canola	nucleus	62.18	56.25
GSMUA_Achr6P01410_001	Banana	nucleus	57.45	56.23
Bra019822.1-P	Field mustard	nucleus	62.55	55.84
CDX97995	Canola	nucleus	62.55	55.84
VIT_18s0001g05860.t01	Wine grape	nucleus	51.27	51.65
CDY26642	Canola	nucleus	54.55	50.68
TraesCS5B01G177600.1	Wheat	nucleus, plastid	56.0	48.73
VIT_08s0007g08070.t01	Wine grape	nucleus	55.64	44.35
TraesCS5D01G184400.1	Wheat	nucleus	57.09	44.23
TraesCS5A01G179800.1	Wheat	nucleus	56.73	43.94
VIT_06s0080g00270.t01	Wine grape	plastid	55.27	43.8
VIT_06s0004g01870.t01	Wine grape	nucleus	52.36	43.11
VIT_13s0064g01060.t01	Wine grape	nucleus	53.45	42.86
EER96535	Sorghum	nucleus	57.09	42.43
Zm00001d020037_P001	Maize	nucleus	57.82	42.29
Zm00001d005566_P001	Maize	nucleus	56.36	40.9
Os09t0307400-00	Rice	nucleus	57.45	40.1
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	60.0	38.28
VIT_06s0061g00780.t01	Wine grape	nucleus	22.91	16.15
VIT_07s0141g00020.t01	Wine grape	vacuole	23.27	15.24
VIT_18s0072g00840.t01	Wine grape	nucleus	27.27	14.23

Protein Annotations

EntrezGene:100252639	wikigene:100252639	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CBI27059	ProteinID:CBI27059.3
UniProt:D7T988	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
EntrezGene:LOC100252639	wikigene:LOC100252639	PFAM:PF12874	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF52	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00015C7C62	ArrayExpress:VIT_01s0011g03100	EnsemblPlantsGene:VIT_01s0011g03100
EnsemblPlants:VIT_01s0011g03100.t01	RefSeq:XP_002278787	RefSeq:XP_002278787.1	RefSeq:XP_010647907.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:2770673..2771827

Molecular Weight (calculated)

30462.6 Da

IEP (calculated)

7.912

GRAVY (calculated)

-0.796

Length

275 amino acids

Sequence
(BLAST)

001: MQTPSFACIS SSESACLEAD EEDEDSILLS LCPPGQSTSK RAIYHPSSSK PQNYQNTNRE DGVTVALHIG PPNACASTSN PNNINGGDPV EGQYWIPSPA
101: QILVGPTQFS CTVCNKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTKPASS ILRLPCYCCA QGCKNNIEHP RSKPLKDFRT LQTHYKRKHG AKPFSCRKCG
201: KAFAVRGDWR THEKNCGKLW FCICGSDFKH KRSLKDHVRA FGDGHAPHSV EMYGVEEEDD NDDDHGNGGH GSVLC

Best Arabidopsis Sequence Match ( AT1G13290.1 )
(BLAST)

001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY

Arabidopsis Description

WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.