Factsheet for VIT_07s0141g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008898	Potato	extracellular, nucleus	48.57	55.43
Solyc04g056320.1.1	Tomato	nucleus	48.33	54.42
KRG97571	Soybean	nucleus, plastid	43.33	53.85
KRH31302	Soybean	nucleus, plastid	43.33	50.0
GSMUA_Achr10P...	Banana	nucleus	41.19	49.29
KRH43171	Soybean	nucleus, plastid	36.9	48.74
KRH59322	Soybean	nucleus	37.38	48.01
TraesCS6D01G188100.1	Wheat	nucleus	36.67	41.73
TraesCS6B01G227100.1	Wheat	nucleus	36.67	41.51
TraesCS6A01G201100.1	Wheat	nucleus	36.43	41.46
OQU85186	Sorghum	nucleus	35.24	40.66
Os02t0572900-01	Rice	cytosol, extracellular, nucleus	37.14	40.62
Zm00001d016911_P001	Maize	nucleus	34.76	34.93
VIT_06s0061g00780.t01	Wine grape	nucleus	26.43	28.46
VIT_18s0072g00840.t01	Wine grape	nucleus	32.38	25.81
VIT_01s0011g03100.t01	Wine grape	nucleus	15.24	23.27
VIT_18s0001g05860.t01	Wine grape	nucleus	14.29	21.98
VIT_13s0064g01060.t01	Wine grape	nucleus	16.9	20.7
VIT_06s0004g01870.t01	Wine grape	nucleus	15.24	19.16
VIT_08s0007g08070.t01	Wine grape	nucleus	15.48	18.84
VIT_06s0080g00270.t01	Wine grape	plastid	14.52	17.58

Protein Annotations

EntrezGene:100243798	wikigene:100243798	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB59081	ProteinID:CCB59081.1
UniProt:F6HWM4	EMBL:FN596274	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
EntrezGene:LOC100243798	wikigene:LOC100243798	PFAM:PF00096	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF71	SMART:SM00355	SUPFAM:SSF57667	TIGR:TC61748	UniParc:UPI000210A489	ArrayExpress:VIT_07s0141g00020
EnsemblPlantsGene:VIT_07s0141g00020	EnsemblPlants:VIT_07s0141g00020.t01	unigene:Vvi.586	RefSeq:XP_002267529	RefSeq:XP_002267529.1	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7_random:-:9416..12893

Molecular Weight (calculated)

46537.6 Da

IEP (calculated)

6.389

GRAVY (calculated)

-0.345

Length

420 amino acids

Sequence
(BLAST)

001: MPCIYLLSPA YCFYMDRILK SPAFSILMSN SGRFFGQAPK FPFVGDITRQ EGTDTRVPLL NLATVQIRVD SLERFLSDSI SRSVVIGPDQ MEMVSTEIVS
101: AIHQIIVNGA ALLSCSQPEY SSFPAAGAAV LPEGYAVMGN GSNPKNLKTP HLTTTAAAVK SGGPDAMDLK MERVEDDVKE EIDGGNDDGD CEVIELDAVE
201: LLAEHIHFCD ICGKGFKRDA NLRMHMRAHG NQFKTPEALA KPDKCMETQR RVRFSCPYQG CNRNKGHKKF RALKSVICVK NHFKRSHCPK MYSCNRCNKK
301: SFSVLADLRS HLKHCGESKW RCSCGTSFSR KDKLFGHMAL FEGHMPAVEN GDEKSVLSAA AVAAATMEED EHEDEDGIGK EEENGMFEGL FQGFGSIGEY
401: CLQDVLRSPP RLYDISDFLD

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.