Factsheet for TraesCS6D01G188100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G201100.1	Wheat	nucleus	98.92	98.92
TraesCS6B01G227100.1	Wheat	nucleus	99.19	98.65
OQU85186	Sorghum	nucleus	71.82	72.8
Os02t0572900-01	Rice	cytosol, extracellular, nucleus	73.17	70.31
Zm00001d016911_P001	Maize	nucleus	72.36	63.88
GSMUA_Achr10P...	Banana	nucleus	44.72	47.01
KRG97571	Soybean	nucleus, plastid	40.38	44.08
KRH59322	Soybean	nucleus	37.4	42.2
KRH43171	Soybean	nucleus, plastid	35.77	41.51
KRH31302	Soybean	nucleus, plastid	39.3	39.84
Solyc04g056320.1.1	Tomato	nucleus	38.21	37.8
PGSC0003DMT400008898	Potato	extracellular, nucleus	37.67	37.77
VIT_07s0141g00020.t01	Wine grape	vacuole	41.73	36.67
TraesCS3D01G054300.1	Wheat	nucleus	23.85	32.71
TraesCS5D01G519100.1	Wheat	nucleus	32.79	29.37
TraesCS1D01G061200.1	Wheat	nucleus	30.08	28.68
TraesCS3D01G375000.1	Wheat	nucleus	32.25	22.88
TraesCS5D01G179700.1	Wheat	nucleus	16.8	20.13
TraesCS7D01G397800.1	Wheat	nucleus	19.24	19.19
TraesCS5D01G184400.1	Wheat	nucleus	18.43	19.15
TraesCS1D01G276200.1	Wheat	nucleus, plastid	17.07	17.17
TraesCS5D01G270700.1	Wheat	nucleus	18.7	16.83
TraesCS7D01G242600.1	Wheat	nucleus	18.43	16.35
TraesCS3D01G364800.1	Wheat	nucleus	15.18	15.26

Protein Annotations

EnsemblPlants:TraesCS6D01G188100.1	EnsemblPlantsGene:TraesCS6D01G188100	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr6D:-:255621602..255622711

Molecular Weight (calculated)

39117.1 Da

IEP (calculated)

6.638

GRAVY (calculated)

-0.324

Length

369 amino acids

Sequence
(BLAST)

001: MDSTTNQFAG AAAGASSANT APLPAMLADA LIGAGAGGGD GDPSAALQRL AALGDRMAAV RRLLVASISG ESQPLSSSDI QSVSSEISSA AHLVVLNAAS
101: LLSSSLPFPA PSATPAPPAP IQELPAAAST ADVLPQEATK GYDVVELDAD ELLAEHVHFC NICGKGFRRD ANLRMHMRAH GDRFKTLDAL SRPGQAKPAD
201: GRDVRFSCPF TGCNRNRAHR RFRPLKSAVC ARNHFRRSHC PKLYACERCG GKKRFAVLAD LRGHLRHCGE EAQWRCSCGT TFSRKDKLFG HLALFEGHMP
301: AMSPPNKDAV TTTTEAPLDI MDEGGIEEQE DGGEGGFDPE FFKEWMEELK DDGVPAGGTV WPGRAAAGQ

Best Arabidopsis Sequence Match ( AT1G34370.1 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.