CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016911_P001	Maize	nucleus	93.13	81.1
Os02t0572900-01	Rice	cytosol, extracellular, nucleus	75.82	71.88
TraesCS6D01G188100.1	Wheat	nucleus	72.8	71.82
TraesCS6A01G201100.1	Wheat	nucleus	72.8	71.82
TraesCS6B01G227100.1	Wheat	nucleus	72.25	70.89
GSMUA_Achr10P...	Banana	nucleus	45.33	47.01
KRG97571	Soybean	nucleus, plastid	41.48	44.67
KRH59322	Soybean	nucleus	39.01	43.43
KRH43171	Soybean	nucleus, plastid	37.09	42.45
KRH31302	Soybean	nucleus, plastid	39.84	39.84
PGSC0003DMT400008898	Potato	extracellular, nucleus	38.74	38.32
Solyc04g056320.1.1	Tomato	nucleus	37.91	37.0
VIT_07s0141g00020.t01	Wine grape	vacuole	40.66	35.24
KXG37177	Sorghum	nucleus	35.71	32.83
OQU80698	Sorghum	nucleus	28.85	24.71
KXG33778	Sorghum	nucleus	32.42	22.74
EER98623	Sorghum	plastid	17.03	19.68
EER96535	Sorghum	nucleus	18.68	18.38
EES18308	Sorghum	plastid	18.68	16.87
EES15412	Sorghum	nucleus	19.51	16.59
EER88644	Sorghum	nucleus, plastid	18.13	16.34
EES03920	Sorghum	plastid	17.03	15.38
EER96965	Sorghum	cytosol, mitochondrion, nucleus, plastid	17.31	13.97

Protein Annotations

EnsemblPlants:OQU85186	EnsemblPlantsGene:SORBI_3004G188300	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71	PFAM:PF00096
PFscan:PS50157	ProteinID:OQU85186	ProteinID:OQU85186.1	ProteinID:OQU85187.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000B8B9695	UniProt:A0A1Z5RND6	MapMan:15.5.15	:

Description

hypothetical protein

Coordinates

chr4:-:54009619..54015542

Molecular Weight (calculated)

38778.8 Da

IEP (calculated)

6.966

GRAVY (calculated)

-0.434

Length

364 amino acids

Sequence
(BLAST)

001: MPGGELADAI MGGGGGGGAD GDPRAALLRL AALGDRMAAV RGRISASISG EARPLSYADI QSVSSEISSA AQLVVLNAAE LLACSVPFPA PLPPPPSAAP
101: SPAPVREIPA VAASVQEQQP LEAAKGDGGG YEVVELDAAE LLAEHVHFCE ICGKGFRRDA NLRMHMRAHG DRFKTLDALS RPGHGHGQPP KLPAGSNVRF
201: SCPFAGCNRN RAHRRFRPLK SAVCARNHFR RSHCPKLYAC ERCGGKKRFA VLADLRSHLR HCGEEAQWRC SCGTTFSRKD KLFGHLALFE GHTPAITKPN
301: KDVVTGPTES TIDAMEEGGF EEGNPDREED EEGGYDPEFF KEWMEELRGG ASGSNWPGPA AAGQ

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.