CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042781_P001	Maize	nucleus	73.2	73.02
TraesCS3D01G364800.1	Wheat	nucleus	64.52	70.84
TraesCS3B01G404000.1	Wheat	nucleus	64.52	69.89
Os01t0859100-01	Rice	nucleus, plastid	65.01	69.68
KRH25207	Soybean	nucleus	23.57	64.19
TraesCS3A01G371700.1	Wheat	cytosol, plastid	65.01	61.36
GSMUA_Achr11P...	Banana	nucleus	32.01	57.59
EES18308	Sorghum	plastid	54.34	54.34
GSMUA_Achr5P26210_001	Banana	nucleus	36.72	53.05
KRH22690	Soybean	nucleus	38.21	48.28
PGSC0003DMT400018308	Potato	nucleus, plastid	38.46	47.55
KRH26622	Soybean	nucleus	37.72	47.35
VIT_06s0080g00270.t01	Wine grape	plastid	39.7	46.11
KRH30442	Soybean	nucleus	37.22	45.45
Bra018638.1-P	Field mustard	nucleus	36.72	43.92
CDX95075	Canola	nucleus	36.72	43.79
CDX93575	Canola	nucleus	36.48	43.62
CDY22690	Canola	nucleus	36.23	43.32
CDY06308	Canola	nucleus	35.73	42.73
AT1G08290.1	Thale cress	nucleus	35.48	42.43
Bra031621.1-P	Field mustard	nucleus	35.24	42.14
EER98623	Sorghum	plastid	32.01	40.95
EER88644	Sorghum	nucleus, plastid	40.2	40.1
Solyc06g074360.2.1	Tomato	nucleus	20.1	38.39
KRH25208	Soybean	nucleus, plastid	16.13	37.14
EER96535	Sorghum	nucleus	32.51	35.41
EES15412	Sorghum	nucleus	37.22	35.05
EER96965	Sorghum	cytosol, mitochondrion, nucleus, plastid	36.72	32.82
KXG37177	Sorghum	nucleus	18.11	18.43
OQU80698	Sorghum	nucleus	18.11	17.18
OQU85186	Sorghum	nucleus	15.38	17.03
KXG33778	Sorghum	nucleus	20.6	15.99

Protein Annotations

EnsemblPlants:EES03920	EnsemblPlantsGene:SORBI_3003G363200	EntrezGene:8062351	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF57
PFscan:PS50157	ProteinID:EES03920	ProteinID:EES03920.1	ProteinID:OQU87893.1	RefSeq:XP_002458800.1	ScanProsite:PS00028
SEG:seg	SUPFAM:SSF57667	UniParc:UPI0001A85264	UniProt:C5XQI1	MapMan:15.5.15	:

Description

hypothetical protein

Coordinates

chr3:-:68047915..68053124

Molecular Weight (calculated)

43509.9 Da

IEP (calculated)

6.601

GRAVY (calculated)

-0.614

Length

403 amino acids

Sequence
(BLAST)

001: MGPRTCAAME GEAVGGSPFF QWLKPRRSSS PSSSRSSSGS SSSSSSTTMA ASAGHHVLAA LGEEGQSAAG GVVQEAVRPS SMTCLPLLSR LGEGKGASDD
101: HEQQCTVKEE IMSGGGDGGA TSDLAKSGVD LNIGLPVGGS CSIEDAIMEE KGDEEEEDDE VDQEAGEDES EEWKHMHGGC KVEGMDLQQE DDDREVVPSS
201: VDGRSNNIVV GVGEFGVVGE ESGLPIAGCQ YWIPTPAQIL IGPVQFICHV CNKTFNRYNN MQMHMWGHGR EYRKGPESLK GTQTLALLKL PCYCCAAGCK
301: NNVAHPRARP LKDFRTLQTH YKRKHGAKPF RCRRCAKPFA VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGAD HGPVDEPAAA AGAKDRIVRF
401: HNR

Best Arabidopsis Sequence Match ( AT1G08290.1 )
(BLAST)

001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE

Arabidopsis Description

WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.