Factsheet for Zm00001d042781_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03920	Sorghum	plastid	73.02	73.2
TraesCS3D01G364800.1	Wheat	nucleus	61.14	67.3
TraesCS3B01G404000.1	Wheat	nucleus	61.63	66.94
Os01t0859100-01	Rice	nucleus, plastid	61.88	66.49
KRH25207	Soybean	nucleus	23.76	64.86
TraesCS3A01G371700.1	Wheat	cytosol, plastid	62.13	58.78
GSMUA_Achr11P...	Banana	nucleus	31.93	57.59
Zm00001d010131_P001	Maize	nucleus, plastid	50.99	52.28
GSMUA_Achr5P26210_001	Banana	nucleus	35.64	51.61
Zm00001d038297_P001	Maize	nucleus	49.75	51.28
KRH22690	Soybean	nucleus	37.38	47.34
PGSC0003DMT400018308	Potato	nucleus, plastid	37.87	46.93
KRH26622	Soybean	nucleus	36.88	46.42
VIT_06s0080g00270.t01	Wine grape	plastid	39.36	45.82
KRH30442	Soybean	nucleus	36.88	45.15
Bra018638.1-P	Field mustard	nucleus	36.63	43.92
CDX95075	Canola	nucleus	36.63	43.79
CDX93575	Canola	nucleus	36.39	43.62
AT1G08290.1	Thale cress	nucleus	36.14	43.32
CDY22690	Canola	nucleus	35.4	42.43
CDY06308	Canola	nucleus	34.9	41.84
Bra031621.1-P	Field mustard	nucleus	34.41	41.25
Zm00001d036812_P001	Maize	nucleus	38.37	39.85
Zm00001d046774_P001	Maize	nucleus	38.37	38.94
Solyc06g074360.2.1	Tomato	nucleus	20.3	38.86
KRH25208	Soybean	nucleus, plastid	15.59	36.0
Zm00001d052883_P001	Maize	nucleus	35.64	34.7
Zm00001d020037_P001	Maize	nucleus	31.93	34.31
Zm00001d005566_P001	Maize	nucleus	32.18	34.3
Zm00001d031416_P001	Maize	nucleus	34.9	33.33
Zm00001d020923_P001	Maize	nucleus	35.64	32.8
Zm00001d034783_P001	Maize	nucleus	16.58	18.31
Zm00001d031895_P001	Maize	nucleus	18.56	17.9
Zm00001d023558_P001	Maize	nucleus	19.06	16.49
Zm00001d042686_P001	Maize	nucleus	20.3	15.83
Zm00001d012260_P001	Maize	nucleus	20.05	15.61
Zm00001d016911_P001	Maize	nucleus	15.35	14.83

Protein Annotations

EnsemblPlants:Zm00001d042781_P001	EnsemblPlants:Zm00001d042781_T001	EnsemblPlantsGene:Zm00001d042781	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF57
PFscan:PS50157	ProteinID:ONM36274.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI000842D6D8
UniProt:A0A1D6N6Q0	MapMan:15.5.15	:	:	:	:

Description

Zinc finger protein WIP6

Coordinates

chr3:+:179455595..179457593

Molecular Weight (calculated)

43570.2 Da

IEP (calculated)

7.292

GRAVY (calculated)

-0.611

Length

404 amino acids

Sequence
(BLAST)

001: MGLRACASME GDEAAVGSPN FFQWLKPRCS LSSPSSRSSS GSSSSSSSTS TMASRHQLLA LGEEGQAAGR GVVVAQQEAS SVTCLPLLSR LGGERKGDDG
101: HHEQCAVKEE TTSGGGATGG LLAPSGVDLN IALPVGGSCS IDDEDAVMEE EKGGGEDEVD QEAAGGGEDE SEWKRTHGGE AEEGMMMMTM DRQERDDDVA
201: PSVEGSDTFV GVVVGEGGRG LPPPLAGCRY WIPTPAQILV GPVQFICHVC NKTFNRYNNM QMHMWGHGRE YRKGPESLKG TQTLALLKLP CYCCAAGCKN
301: NVAHPRARPL KDFRTLQTHY KRKHGAKPFR CRRCAKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHVRSFGSNH CPVDDEAAAA AAPPKDRTVR
401: FHNR

Best Arabidopsis Sequence Match ( AT1G08290.1 )
(BLAST)

001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE

Arabidopsis Description

WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.