Factsheet for Zm00001d031895_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009716_P001
Zm00001d011373_P002
Zm00001d016081_P002
Zm00001d044191_P004
Zm00001d046072_P001
Zm00001d053382_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22890.1	Zm00001d009716_P001	AT4G01090.1	21798944
AT5G22890.1	Zm00001d011373_P002	AT4G01090.1	21798944
AT5G22890.1	Zm00001d016081_P002	AT4G01090.1	21798944
AT5G22890.1	Zm00001d044191_P004	AT4G01090.1	21798944
AT5G22890.1	Zm00001d046072_P001	AT4G01090.1	21798944
AT5G22890.1	Zm00001d053382_P002	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80698	Sorghum	nucleus	79.95	78.82
Os08t0562300-01	Rice	nucleus	52.98	57.66
TraesCS1D01G061200.1	Wheat	nucleus	51.55	55.81
TraesCS1A01G060200.1	Wheat	nucleus	51.07	55.73
TraesCS1B01G078700.1	Wheat	nucleus	50.6	54.08
GSMUA_Achr1P15330_001	Banana	cytosol	36.04	53.74
GSMUA_Achr11P...	Banana	nucleus	39.86	49.12
KRH22822	Soybean	plastid	32.22	48.56
PGSC0003DMT400001105	Potato	nucleus	33.89	44.65
CDY09179	Canola	nucleus	34.37	44.44
VIT_06s0061g00780.t01	Wine grape	nucleus	40.1	43.08
CDY26965	Canola	nucleus	36.28	41.53
AT5G22890.1	Thale cress	nucleus	36.52	41.02
Solyc11g066420.1.1	Tomato	nucleus, plastid	37.47	40.89
CDY69109	Canola	nucleus	35.8	40.32
CDY31715	Canola	nucleus	35.56	39.63
CDY26966	Canola	nucleus	35.56	39.63
CDX98183	Canola	nucleus	35.56	39.63
CDX74505	Canola	nucleus	35.56	39.63
Bra002438.1-P	Field mustard	nucleus	35.56	39.63
CDY09178	Canola	nucleus	34.84	39.57
Bra020223.1-P	Field mustard	nucleus	22.2	31.31
Bra020224.1-P	Field mustard	nucleus	22.43	31.23
Zm00001d034783_P001	Maize	nucleus	25.3	28.96
Zm00001d023558_P001	Maize	nucleus	28.64	25.7
Zm00001d016911_P001	Maize	nucleus	25.54	25.6
Zm00001d042686_P001	Maize	nucleus	30.31	24.52
Zm00001d012260_P001	Maize	nucleus	30.07	24.28
Bra002437.1-P	Field mustard	nucleus	12.65	21.29
Zm00001d036812_P001	Maize	nucleus	17.9	19.28
Zm00001d020037_P001	Maize	nucleus	16.71	18.62
Zm00001d042781_P001	Maize	nucleus	17.9	18.56
Zm00001d038297_P001	Maize	nucleus	17.18	18.37
Zm00001d005566_P001	Maize	nucleus	16.47	18.21
Zm00001d010131_P001	Maize	nucleus, plastid	16.95	18.02
Zm00001d046774_P001	Maize	nucleus	16.95	17.84
Zm00001d052883_P001	Maize	nucleus	16.71	16.87
Zm00001d020923_P001	Maize	nucleus	17.42	16.63
Zm00001d031416_P001	Maize	nucleus	15.75	15.6

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	UniProt:A0A1D6KM37	GO:GO:0003674	GO:GO:0003676	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719
GO:GO:0009987	GO:GO:0010044	GO:GO:0010200	GO:GO:0010447	InterPro:IPR013087	ProteinID:ONM03908.1
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF41	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000845183C	EnsemblPlantsGene:Zm00001d031895	EnsemblPlants:Zm00001d031895_P001	EnsemblPlants:Zm00001d031895_T001	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

C2H2 and C2HC zinc fingers superfamily protein

Coordinates

chr1:+:205808285..205809544

Molecular Weight (calculated)

44828.1 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.434

Length

419 amino acids

Sequence
(BLAST)

001: MIGGEGNPYY LQNQLFHHGH AALHGMEGGG FHAIEPPPAS DSAADALLYN LSVLRDKVQQ LQPLVGLALA HDGPGPVAAA PGAGAAIQEI IAAASSMMYA
101: FQQLCGHGHG HGGAATASAN NAAQQATQQG GANIVAVADN HGRMADTAAT FGDHHQHQQA PVTDHVMQQQ WQQQQHHCYG GGYGRRIHDS KMTPVAAAVA
201: MPSSSHSKPM TTAVAGMAKE EVAAGTIIQL EAAELLAKYT HYCQVCGKGF KRDANLRMHM RAHGDEYKSS AALANPAKAA VVRNATAAPS SGAATTRSLY
301: SCPHEGCRWN RKHAKFQPLK SVICAKNHYK RSHCPKMYVC NRCNRKHFSV LSDLRTHEKH CGDHRWLCSC GTSFSRKDKL IGHLALFSGH QPAVPLDRQA
401: NGGDRRSSSM SPWTTQLGT

Best Arabidopsis Sequence Match ( AT5G22890.1 )
(BLAST)

001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK

Arabidopsis Description

STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.