Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000943.1-P | |
| Bra017007.1-P | |
| Bra017974.1-P | |
| Bra037384.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G22890.1 | Bra017007.1-P | AT2G19650.1 | 21798944 |
| AT5G22890.1 | Bra017974.1-P | AT3G49580.1 | 21798944 |
| AT5G22890.1 | Bra000943.1-P | AT4G01090.1 | 21798944 |
| AT5G22890.1 | Bra037384.1-P | AT4G01090.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020223.1-P | Field mustard | nucleus | 75.75 | 76.77 |
| CDY09179 | Canola | nucleus | 80.07 | 74.38 |
| Bra002437.1-P | Field mustard | nucleus | 47.84 | 57.83 |
| Bra002438.1-P | Field mustard | nucleus | 72.09 | 57.71 |
| AT5G22890.1 | Thale cress | nucleus | 66.45 | 53.62 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 30.23 | 32.38 |
| VIT_06s0061g00780.t01 | Wine grape | nucleus | 37.87 | 29.23 |
| KRH22822 | Soybean | plastid | 26.91 | 29.14 |
| Solyc11g066420.1.1 | Tomato | nucleus, plastid | 35.55 | 27.86 |
| PGSC0003DMT400001105 | Potato | nucleus | 29.24 | 27.67 |
| GSMUA_Achr11P... | Banana | nucleus | 29.24 | 25.88 |
| TraesCS1A01G060200.1 | Wheat | nucleus | 31.56 | 24.74 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 31.89 | 24.49 |
| TraesCS1D01G061200.1 | Wheat | nucleus | 30.23 | 23.51 |
| Os08t0562300-01 | Rice | nucleus | 29.9 | 23.38 |
| OQU80698 | Sorghum | nucleus | 31.89 | 22.59 |
| Zm00001d031895_P001 | Maize | nucleus | 31.23 | 22.43 |
| Os04t0165200-01 | Rice | nucleus | 25.91 | 21.02 |
| Bra040971.1-P | Field mustard | nucleus | 23.26 | 16.43 |
| Bra036750.1-P | Field mustard | nucleus | 25.91 | 15.89 |
| Bra003295.1-P | Field mustard | nucleus | 12.29 | 15.04 |
| Bra028067.1-P | Field mustard | nucleus | 12.62 | 13.24 |
| Bra014612.1-P | Field mustard | nucleus, plastid | 15.61 | 12.91 |
| Bra007346.1-P | Field mustard | nucleus | 12.96 | 12.7 |
| Bra019822.1-P | Field mustard | nucleus | 11.96 | 11.69 |
| Bra018902.1-P | Field mustard | plastid | 12.96 | 11.57 |
| Bra018638.1-P | Field mustard | nucleus | 12.96 | 11.57 |
| Bra030450.1-P | Field mustard | nucleus | 12.96 | 11.47 |
| Bra031239.1-P | Field mustard | nucleus | 13.29 | 11.14 |
| Bra023918.1-P | Field mustard | nucleus | 12.96 | 10.86 |
| Bra031621.1-P | Field mustard | nucleus | 11.3 | 10.09 |
Protein Annotations
| EnsemblPlants:Bra020224.1 | EnsemblPlants:Bra020224.1-P | EnsemblPlantsGene:Bra020224 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF41 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0002543510 |
| UniProt:M4DUN1 | MapMan:15.5.15 | : | : | : | : |
Description
AT5G22890 (E=6e-092) | zinc finger (C2H2 type) family protein
Coordinates
chrA02:-:5658637..5659542
Molecular Weight (calculated)
34152.0 Da
IEP (calculated)
6.649
GRAVY (calculated)
-0.689
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQEDHMNQG DHIMNNGEGS MPCFSETTIT SSNHLYPMTA ATKSSEEDHS ISLSLLLNLS TIQDKVHHIQ SLVSFFMISN NNQSSESTSS LAVANIESLV
101: QEIVTAATSM MLTCQQRHIP SNNNSNCNNE QTVDAIVMKY STQEPTPDRD FTPESSTNFL GVQERGNISF IDQNLDWHGT QSINPKKDQH RFKTRPGNYE
201: ILELGADDLL AKFTHYCQIC GKGFKRDANL RMHMRAHGDE YKTREALISP TSHDKKVEEH SLMRHYYSCP QHGCRWNQRH EKFQPLKSVI VRKCICAGDV
301: T
101: QEIVTAATSM MLTCQQRHIP SNNNSNCNNE QTVDAIVMKY STQEPTPDRD FTPESSTNFL GVQERGNISF IDQNLDWHGT QSINPKKDQH RFKTRPGNYE
201: ILELGADDLL AKFTHYCQIC GKGFKRDANL RMHMRAHGDE YKTREALISP TSHDKKVEEH SLMRHYYSCP QHGCRWNQRH EKFQPLKSVI VRKCICAGDV
301: T
001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
Arabidopsis Description
STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.