Factsheet for Bra031621.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06308	Canola	nucleus	99.11	99.11
KRH25207	Soybean	nucleus	33.83	77.03
Bra018638.1-P	Field mustard	nucleus	59.05	59.05
AT1G08290.1	Thale cress	nucleus	57.57	57.57
KRH26622	Soybean	nucleus	54.01	56.7
KRH22690	Soybean	nucleus	53.12	56.11
KRH30442	Soybean	nucleus	52.82	53.94
VIT_06s0080g00270.t01	Wine grape	plastid	54.3	52.74
Bra003295.1-P	Field mustard	nucleus	37.09	50.81
GSMUA_Achr5P26210_001	Banana	nucleus	41.84	50.54
PGSC0003DMT400018308	Potato	nucleus, plastid	48.37	50.0
Bra028067.1-P	Field mustard	nucleus	38.28	44.95
Bra007346.1-P	Field mustard	nucleus	39.76	43.65
Bra019822.1-P	Field mustard	nucleus	39.17	42.86
Bra030450.1-P	Field mustard	nucleus	41.54	41.18
Bra018902.1-P	Field mustard	plastid	40.65	40.65
Os01t0859100-01	Rice	nucleus, plastid	43.62	39.1
Bra023918.1-P	Field mustard	nucleus	41.54	39.0
Bra031239.1-P	Field mustard	nucleus	41.25	38.72
Bra014612.1-P	Field mustard	nucleus, plastid	40.95	37.91
TraesCS3D01G364800.1	Wheat	nucleus	40.36	37.06
TraesCS3B01G404000.1	Wheat	nucleus	40.65	36.83
Os05t0444200-01	Rice	plastid	41.84	36.25
TraesCS1B01G285900.1	Wheat	nucleus, plastid	39.76	36.22
EES18308	Sorghum	plastid	43.03	35.98
TraesCS1D01G276200.1	Wheat	nucleus, plastid	38.87	35.69
Solyc06g074360.2.1	Tomato	nucleus	22.26	35.55
EES03920	Sorghum	plastid	42.14	35.24
Zm00001d038297_P001	Maize	nucleus	40.95	35.2
Zm00001d010131_P001	Maize	nucleus, plastid	40.95	35.03
Zm00001d042781_P001	Maize	nucleus	41.25	34.41
TraesCS1A01G276800.1	Wheat	nucleus, plastid	38.58	34.3
KRH25208	Soybean	nucleus, plastid	17.21	33.14
TraesCS3A01G371700.1	Wheat	cytosol, plastid	40.65	32.08
Bra002438.1-P	Field mustard	nucleus	18.1	16.22
Bra040971.1-P	Field mustard	nucleus	20.18	15.96
Bra036750.1-P	Field mustard	nucleus	21.07	14.46
Bra020223.1-P	Field mustard	nucleus	10.09	11.45
Bra020224.1-P	Field mustard	nucleus	10.09	11.3
Bra002437.1-P	Field mustard	nucleus	5.04	6.83

Protein Annotations

EnsemblPlants:Bra031621.1	EnsemblPlants:Bra031621.1-P	EnsemblPlantsGene:Bra031621	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF58
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002543311
UniProt:M4ES43	MapMan:15.5.15	:	:	:	:

Description

AT1G08290 (E=3e-160) | zinc finger (C2H2 type) protein (WIP3)

Coordinates

chrA09:+:35542190..35544199

Molecular Weight (calculated)

38476.7 Da

IEP (calculated)

8.105

GRAVY (calculated)

-0.754

Length

337 amino acids

Sequence
(BLAST)

001: MNLDEKGLGF ESSSFLAWLR ASSNSSSPSV LFRTKTQDVV SRSYHQSQMK LERSLFLYQP QEPLNTNTIQ CLPLLNKLME DESQASDDIK EEMDDDVVTL
101: RIGLPTYHRG NSEEDDSDTT SDHHQEKPIK REMTEDGVVM MKKRRTMKFQ QEMIDSDMGV CGKRFWIPSP AQIHVGPMQF ACSICSKTFT RYNNMQMHMW
201: GHGSEFRKGA DSLKGTTQPA AILRLPCYCC AEGCKNNINH PRAKPLKDFR TLRTHYKRTH GSKHFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIK SFGLGHSPHP SLSFDGFEED VECVTTE

Best Arabidopsis Sequence Match ( AT1G08290.1 )
(BLAST)

001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE

Arabidopsis Description

WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.