Factsheet for TraesCS1A01G276800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G276200.1	Wheat	nucleus, plastid	90.24	93.19
TraesCS1B01G285900.1	Wheat	nucleus, plastid	89.18	91.35
KRH25207	Soybean	nucleus	25.33	64.86
GSMUA_Achr11P...	Banana	nucleus	32.98	55.8
GSMUA_Achr5P26210_001	Banana	nucleus	33.51	45.52
KRH22690	Soybean	nucleus	36.94	43.89
KRH26622	Soybean	nucleus	36.68	43.3
Os05t0444200-01	Rice	plastid	43.8	42.67
TraesCS5A01G179800.1	Wheat	nucleus	39.31	41.97
KRH30442	Soybean	nucleus	36.15	41.52
EES18308	Sorghum	plastid	44.06	41.44
Zm00001d010131_P001	Maize	nucleus, plastid	43.01	41.37
Zm00001d038297_P001	Maize	nucleus	42.22	40.82
PGSC0003DMT400018308	Potato	nucleus, plastid	34.83	40.49
VIT_06s0080g00270.t01	Wine grape	plastid	36.94	40.35
CDY22690	Canola	nucleus	35.09	39.47
AT1G08290.1	Thale cress	nucleus	34.83	39.17
CDY06308	Canola	nucleus	34.83	39.17
TraesCS3A01G371700.1	Wheat	cytosol, plastid	43.8	38.88
Bra018638.1-P	Field mustard	nucleus	34.56	38.87
CDX93575	Canola	nucleus	34.56	38.87
CDX95075	Canola	nucleus	34.56	38.76
TraesCS5A01G175400.1	Wheat	nucleus	31.4	38.64
Bra031621.1-P	Field mustard	nucleus	34.3	38.58
TraesCS7A01G404400.1	Wheat	nucleus	35.36	36.41
TraesCS5A01G263200.1	Wheat	nucleus	35.88	33.09
Solyc06g074360.2.1	Tomato	nucleus	14.78	26.54
KRH25208	Soybean	nucleus, plastid	11.61	25.14
TraesCS1A01G060200.1	Wheat	nucleus	18.73	18.49
TraesCS4A01G352700.1	Wheat	nucleus	18.73	16.99
TraesCS6A01G201100.1	Wheat	nucleus	16.36	16.8
TraesCS3A01G381900.1	Wheat	nucleus	17.41	12.74

Protein Annotations

EnsemblPlants:TraesCS1A01G276800.1	EnsemblPlantsGene:TraesCS1A01G276800	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593	PANTHER:PTHR10593:SF102
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr1A:+:471728803..471730537

Molecular Weight (calculated)

41603.0 Da

IEP (calculated)

6.984

GRAVY (calculated)

-0.589

Length

379 amino acids

Sequence
(BLAST)

001: MVLSAYAMES ASLGVRYFEW LRPRSPRASS PSSVPASLSS PSSDFLVPGK DHPSTMMCLP LLGRVGAGEE TTSGGTPVGA QTSPVKEELS GITEDAGVDL
101: NIGLPAGGGY SSEEEVPPMA MSMDEDEEEE EEEVETDEEE EEKPRYERCK VEAGVHVEHS EMLVESVEGS DLGSVGGEES SCCRHRRFWI PTPAQILIGA
201: VQFVCHVCSK TFNRYNNMQM HMWGHGREYR KGPESLKGAA GQSTHAAALA LLRLPCYCCA AGCRNNVAHP RARPLKDFRT LQTHYRRKHG AKPFACRRCA
301: KPFAVKGDWR THEKNCGKRW FCACGSDFKH KRSLNDHVRS FGGGHHPVAP ADAAAAPAPA QQRREHIIRF DQQCHGARA

Best Arabidopsis Sequence Match ( AT1G08290.1 )
(BLAST)

001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE

Arabidopsis Description

WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.