Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G179700.1 | Wheat | nucleus | 97.73 | 97.73 |
| TraesCS5B01G172600.1 | Wheat | mitochondrion | 41.56 | 93.43 |
| Os09t0282100-00 | Rice | cytosol, mitochondrion, nucleus | 38.31 | 81.94 |
| EER98623 | Sorghum | plastid | 68.18 | 66.67 |
| Os09t0282300-00 | Rice | nucleus | 32.47 | 58.14 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 55.52 | 46.47 |
| TraesCS5A01G263200.1 | Wheat | nucleus | 54.22 | 40.63 |
| TraesCS5A01G179800.1 | Wheat | nucleus | 38.96 | 33.8 |
| TraesCS1A01G276800.1 | Wheat | nucleus, plastid | 38.64 | 31.4 |
| TraesCS3A01G371700.1 | Wheat | cytosol, plastid | 43.51 | 31.38 |
| TraesCS1A01G060200.1 | Wheat | nucleus | 23.05 | 18.49 |
| TraesCS4A01G352700.1 | Wheat | nucleus | 23.38 | 17.22 |
| TraesCS6A01G201100.1 | Wheat | nucleus | 20.13 | 16.8 |
| TraesCS3A01G381900.1 | Wheat | nucleus | 21.43 | 12.74 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G175400.1 | EnsemblPlantsGene:TraesCS5A01G175400 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF67 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr5A:+:368791844..368793603
Molecular Weight (calculated)
34481.7 Da
IEP (calculated)
8.225
GRAVY (calculated)
-0.802
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPYTFLRP HIDRPFFPFQ RSLVSPSSPP KQALPLLSLL PSSHDHSKIL GCGYAGDDDH HQLKKEDEDV NISLQIGPPN PNPAPNLLRS TVSDGGCDDA
101: TGTTQDQCGG GDHSRADEQE EEEDDDDDAA GDGLCSEYFA AGKLTKGKYW IPTPAQILIG PTHFACPVCC KTFSRYNNLQ MHMWGHGSQY RRGPDSLRGT
201: QPAAMLRLPC FCCAPGCRSH VDHPRARPLK DFRTLQTHYK RRHCAKPFLC RKCGKALAVR GDWRTHEKNC GRRWHCTCGS DFKHKRSLKD HIRAFGQDHV
301: ERPPAAKM
101: TGTTQDQCGG GDHSRADEQE EEEDDDDDAA GDGLCSEYFA AGKLTKGKYW IPTPAQILIG PTHFACPVCC KTFSRYNNLQ MHMWGHGSQY RRGPDSLRGT
201: QPAAMLRLPC FCCAPGCRSH VDHPRARPLK DFRTLQTHYK RRHCAKPFLC RKCGKALAVR GDWRTHEKNC GRRWHCTCGS DFKHKRSLKD HIRAFGQDHV
301: ERPPAAKM
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Arabidopsis Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.