Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G270700.1 | Wheat | nucleus | 94.4 | 94.63 |
| TraesCS5B01G262400.1 | Wheat | nucleus | 92.7 | 93.38 |
| Zm00001d020923_P001 | Maize | nucleus | 69.1 | 64.69 |
| EER96965 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 67.64 | 61.64 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 49.15 | 54.89 |
| TraesCS5A01G175400.1 | Wheat | nucleus | 40.63 | 54.22 |
| TraesCS5A01G179800.1 | Wheat | nucleus | 32.6 | 37.75 |
| TraesCS1A01G276800.1 | Wheat | nucleus, plastid | 33.09 | 35.88 |
| TraesCS3A01G371700.1 | Wheat | cytosol, plastid | 35.28 | 33.96 |
| TraesCS4A01G352700.1 | Wheat | nucleus | 20.19 | 19.86 |
| TraesCS1A01G060200.1 | Wheat | nucleus | 17.76 | 19.01 |
| TraesCS6A01G201100.1 | Wheat | nucleus | 16.79 | 18.7 |
| TraesCS3A01G381900.1 | Wheat | nucleus | 18.98 | 15.06 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G263200.1 | EnsemblPlantsGene:TraesCS5A01G263200 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF68 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr5A:+:476222098..476225792
Molecular Weight (calculated)
44377.7 Da
IEP (calculated)
6.736
GRAVY (calculated)
-0.680
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MENPYTTFLK NYRQHRYYFS PTPVPAPVAS TTAPPPVSAY SSSPFFSPPP PPPPTTPSSP PLREALPLLS LAPASRRSRE RGRGPGPDDS DDGDDDVDEE
101: ERKQAPGPAA SSSLHHNQQL AGRQLFADLN SKATDDPMDS AAGGAAGDVT VALHIGLPSA GTAADLISGI SAAARAARDD EEEEDDRLNK ELSGGCAEED
201: GDDDGENEAA VAPVLGFAST PIGRLNKGQY WIPTPTQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG IQPTAMLRLP CYCCAPGCRN
301: NVDHPRAKPL KDFRTLQTHY KRKHGLKPFL CRRCGKAFAV KGDWRTHEKN CGKLWYCLCG SEFKHKRSLK DHARAFGQGH GALGGAGLDD DDDCAISDVE
401: HDGAAAGARS L
101: ERKQAPGPAA SSSLHHNQQL AGRQLFADLN SKATDDPMDS AAGGAAGDVT VALHIGLPSA GTAADLISGI SAAARAARDD EEEEDDRLNK ELSGGCAEED
201: GDDDGENEAA VAPVLGFAST PIGRLNKGQY WIPTPTQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG IQPTAMLRLP CYCCAPGCRN
301: NVDHPRAKPL KDFRTLQTHY KRKHGLKPFL CRRCGKAFAV KGDWRTHEKN CGKLWYCLCG SEFKHKRSLK DHARAFGQGH GALGGAGLDD DDDCAISDVE
401: HDGAAAGARS L
001: MSNPACSNLF NNGCDHNSFN YSTSLSYIYN SHGSYYYSNT TNPNYINHTH TTSTSPNSPP LREALPLLSL SPIRHQEQQD QHYFMDTHQI SSSNFLDDPL
101: VTVDLHLGLP NYGVGESIRS NIAPDATTDE QDQDHDRGVE VTVESHLDDD DDHHGDLHRG HHYWIPTPSQ ILIGPTQFTC PLCFKTFNRY NNMQMHMWGH
201: GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGSK PFACRMCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR
301: SLKDHVKAFG NGHVPCGIDS FGGDHEDYYD AASDIEQ
101: VTVDLHLGLP NYGVGESIRS NIAPDATTDE QDQDHDRGVE VTVESHLDDD DDHHGDLHRG HHYWIPTPSQ ILIGPTQFTC PLCFKTFNRY NNMQMHMWGH
201: GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGSK PFACRMCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR
301: SLKDHVKAFG NGHVPCGIDS FGGDHEDYYD AASDIEQ
Arabidopsis Description
WIP5Zinc finger protein WIP5 [Source:UniProtKB/Swiss-Prot;Acc:Q8W031]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.