Factsheet for Zm00001d020923_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96965	Sorghum	cytosol, mitochondrion, nucleus, plastid	77.68	75.61
TraesCS5D01G270700.1	Wheat	nucleus	65.6	70.24
TraesCS5B01G262400.1	Wheat	nucleus	65.15	70.1
TraesCS5A01G263200.1	Wheat	nucleus	64.69	69.1
Zm00001d052883_P001	Maize	nucleus	58.77	62.17
Zm00001d031416_P001	Maize	nucleus	58.31	60.52
Zm00001d036812_P001	Maize	nucleus	46.01	51.93
Zm00001d046774_P001	Maize	nucleus	45.56	50.25
Zm00001d038297_P001	Maize	nucleus	33.94	38.01
Zm00001d010131_P001	Maize	nucleus, plastid	33.94	37.82
Zm00001d020037_P001	Maize	nucleus	32.12	37.5
Zm00001d005566_P001	Maize	nucleus	31.44	36.41
Zm00001d042781_P001	Maize	nucleus	32.8	35.64
Zm00001d034783_P001	Maize	nucleus	16.86	20.22
Zm00001d031895_P001	Maize	nucleus	16.63	17.42
Zm00001d023558_P001	Maize	nucleus	17.77	16.7
Zm00001d016911_P001	Maize	nucleus	15.26	16.03
Zm00001d042686_P001	Maize	nucleus	18.68	15.83
Zm00001d012260_P001	Maize	nucleus	18.68	15.8

Protein Annotations

EnsemblPlants:Zm00001d020923_P001	EnsemblPlants:Zm00001d020923_T001	EnsemblPlantsGene:Zm00001d020923	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF68
PFscan:PS50157	ProteinID:ONM55815.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI000220C666
UniProt:A0A1D6I6W9	MapMan:15.5.15	:	:	:	:

Description

Zinc finger protein

Coordinates

chr7:+:136683805..136689077

Molecular Weight (calculated)

47369.7 Da

IEP (calculated)

6.309

GRAVY (calculated)

-0.866

Length

439 amino acids

Sequence
(BLAST)

001: MENPYTSFFN SHPQHHRYYY HPAPPPPAPA PAAYHPSLPF FAAHRQPPAP TAPAPPSPPL REALPLLSLA PTRHEERERR ARPPAPALED SEENGRDEGE
101: EEQEEEEGPT ASSKSNHGQH QRLGVGRQRG FFADLNASAA GDDDDPMDVE PEAAADGSGS GSAAAGDDVT VALRIGLPLP GPAELVSDLS SSGGARRQQH
201: QHDGGGGEEE EEDEEGDGEN GGGGEEEGTT AAAPLGFPSS PIGRLNKGQY WIPTPSQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG
301: IQPTAMLRLP CYCCSPGCRN NIDHPRAKPL KDFRTLQTHY KRKHGLKPFL CRRCGKAFAV KGDWRTHEKN CGRLWYCLCG SEFKHKRSLK DHARAFGRGH
401: GFVGGGPPGA GCGGGLDDDD DGAVSDVEHD GAATAARSM

Best Arabidopsis Sequence Match ( AT3G57670.1 )
(BLAST)

001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK

Arabidopsis Description

WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.