Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18308 | Sorghum | plastid | 71.17 | 69.23 |
| Zm00001d010131_P001 | Maize | nucleus, plastid | 68.11 | 67.77 |
| KRH25207 | Soybean | nucleus | 23.47 | 62.16 |
| Os05t0444200-01 | Rice | plastid | 57.91 | 58.35 |
| GSMUA_Achr11P... | Banana | nucleus | 32.14 | 56.25 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 35.97 | 50.54 |
| Zm00001d042781_P001 | Maize | nucleus | 51.28 | 49.75 |
| KRH26622 | Soybean | nucleus | 38.27 | 46.73 |
| KRH22690 | Soybean | nucleus | 38.01 | 46.71 |
| PGSC0003DMT400018308 | Potato | nucleus, plastid | 36.99 | 44.48 |
| KRH30442 | Soybean | nucleus | 37.24 | 44.24 |
| VIT_06s0080g00270.t01 | Wine grape | plastid | 38.78 | 43.8 |
| TraesCS1D01G276200.1 | Wheat | nucleus, plastid | 40.31 | 43.05 |
| TraesCS1B01G285900.1 | Wheat | nucleus, plastid | 40.56 | 42.97 |
| TraesCS1A01G276800.1 | Wheat | nucleus, plastid | 40.82 | 42.22 |
| CDX93575 | Canola | nucleus | 36.22 | 42.14 |
| Bra018638.1-P | Field mustard | nucleus | 35.97 | 41.84 |
| CDX95075 | Canola | nucleus | 35.97 | 41.72 |
| CDY22690 | Canola | nucleus | 35.71 | 41.54 |
| CDY06308 | Canola | nucleus | 35.71 | 41.54 |
| AT1G08290.1 | Thale cress | nucleus | 35.71 | 41.54 |
| Bra031621.1-P | Field mustard | nucleus | 35.2 | 40.95 |
| Zm00001d036812_P001 | Maize | nucleus | 39.29 | 39.59 |
| Zm00001d046774_P001 | Maize | nucleus | 40.05 | 39.45 |
| Zm00001d052883_P001 | Maize | nucleus | 37.5 | 35.42 |
| Zm00001d005566_P001 | Maize | nucleus | 33.42 | 34.56 |
| Zm00001d020037_P001 | Maize | nucleus | 32.91 | 34.31 |
| Zm00001d031416_P001 | Maize | nucleus | 36.99 | 34.28 |
| Solyc06g074360.2.1 | Tomato | nucleus | 18.37 | 34.12 |
| Zm00001d020923_P001 | Maize | nucleus | 38.01 | 33.94 |
| KRH25208 | Soybean | nucleus, plastid | 14.29 | 32.0 |
| Zm00001d034783_P001 | Maize | nucleus | 17.86 | 19.13 |
| Zm00001d031895_P001 | Maize | nucleus | 18.37 | 17.18 |
| Zm00001d023558_P001 | Maize | nucleus | 19.13 | 16.06 |
| Zm00001d016911_P001 | Maize | nucleus | 17.09 | 16.03 |
| Zm00001d042686_P001 | Maize | nucleus | 19.64 | 14.86 |
| Zm00001d012260_P001 | Maize | nucleus | 19.39 | 14.64 |
Protein Annotations
| EnsemblPlants:Zm00001d038297_P001 | EnsemblPlants:Zm00001d038297_T001 | EnsemblPlantsGene:Zm00001d038297 | EntrezGene:103630405 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF102 |
| PFscan:PS50157 | ProteinID:AQK86250.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0002211068 |
| UniProt:A0A1D6M552 | MapMan:15.5.15 | : | : | : | : |
Description
Zinc finger protein WIP6
Coordinates
chr6:+:153655823..153658352
Molecular Weight (calculated)
43818.6 Da
IEP (calculated)
7.924
GRAVY (calculated)
-0.791
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVRRACAIM EGAFSVPYYE WLKPRSSPST SCWTTMTLST PSSMDRLLAA VAGGHDDDEE RDATMCLPLL GRLEGRARTP EYHSPVKEEL SNNNTTTTTT
101: GARGEESRTG AGVHLTIGLP ATGGGAGGGY SMSSEEAPMD DEDDEQDEDY FELEEEDQKA SEHDNKCKME AAGEAEQRRP GGEEEGIKSF VGSRGRRYWI
201: PTPAQILVGP VQFMCHVCSK TFNRYNNMQM HMWGHGREYR KGPESLRGTQ AATLALLKLP CYCCAPGCRN GVAHPRARPL KDFRTLQTHY RRKHGDKRFA
301: CRRCAKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHVRSFGGGH CSVTPDHHQQ QQAPVPVPLI NKQPLDRMII RFDQGAPWTS HA
101: GARGEESRTG AGVHLTIGLP ATGGGAGGGY SMSSEEAPMD DEDDEQDEDY FELEEEDQKA SEHDNKCKME AAGEAEQRRP GGEEEGIKSF VGSRGRRYWI
201: PTPAQILVGP VQFMCHVCSK TFNRYNNMQM HMWGHGREYR KGPESLRGTQ AATLALLKLP CYCCAPGCRN GVAHPRARPL KDFRTLQTHY RRKHGDKRFA
301: CRRCAKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHVRSFGGGH CSVTPDHHQQ QQAPVPVPLI NKQPLDRMII RFDQGAPWTS HA
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Arabidopsis Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.