Factsheet for Bra018638.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93575	Canola	nucleus	99.11	99.11
CDX95075	Canola	nucleus	98.22	97.93
AT1G08290.1	Thale cress	nucleus	85.16	85.16
KRH25207	Soybean	nucleus	34.72	79.05
Bra031621.1-P	Field mustard	nucleus	59.05	59.05
KRH26622	Soybean	nucleus	53.12	55.76
KRH22690	Soybean	nucleus	52.52	55.49
Bra003295.1-P	Field mustard	nucleus	40.06	54.88
PGSC0003DMT400018308	Potato	nucleus, plastid	52.23	53.99
KRH30442	Soybean	nucleus	52.23	53.33
VIT_06s0080g00270.t01	Wine grape	plastid	54.01	52.45
GSMUA_Achr5P26210_001	Banana	nucleus	41.84	50.54
Bra007346.1-P	Field mustard	nucleus	43.03	47.23
Bra028067.1-P	Field mustard	nucleus	39.76	46.69
Bra030450.1-P	Field mustard	nucleus	43.92	43.53
Bra019822.1-P	Field mustard	nucleus	39.76	43.51
Bra018902.1-P	Field mustard	plastid	43.03	43.03
Bra014612.1-P	Field mustard	nucleus, plastid	45.99	42.58
Solyc06g074360.2.1	Tomato	nucleus	26.11	41.71
Bra023918.1-P	Field mustard	nucleus	44.21	41.5
Bra031239.1-P	Field mustard	nucleus	43.92	41.23
Os01t0859100-01	Rice	nucleus, plastid	44.21	39.63
TraesCS3D01G364800.1	Wheat	nucleus	42.73	39.24
TraesCS3B01G404000.1	Wheat	nucleus	43.03	38.98
Os05t0444200-01	Rice	plastid	43.62	37.79
EES18308	Sorghum	plastid	45.1	37.72
EES03920	Sorghum	plastid	43.92	36.72
Zm00001d042781_P001	Maize	nucleus	43.92	36.63
Zm00001d010131_P001	Maize	nucleus, plastid	42.73	36.55
TraesCS1D01G276200.1	Wheat	nucleus, plastid	39.47	36.24
TraesCS1B01G285900.1	Wheat	nucleus, plastid	39.76	36.22
Zm00001d038297_P001	Maize	nucleus	41.84	35.97
KRH25208	Soybean	nucleus, plastid	18.4	35.43
TraesCS1A01G276800.1	Wheat	nucleus, plastid	38.87	34.56
TraesCS3A01G371700.1	Wheat	cytosol, plastid	42.73	33.72
Bra002438.1-P	Field mustard	nucleus	20.47	18.35
Bra040971.1-P	Field mustard	nucleus	22.26	17.61
Bra036750.1-P	Field mustard	nucleus	22.85	15.68
Bra020224.1-P	Field mustard	nucleus	11.57	12.96
Bra020223.1-P	Field mustard	nucleus	11.28	12.79
Bra002437.1-P	Field mustard	nucleus	6.53	8.84

Protein Annotations

EnsemblPlants:Bra018638.1	EnsemblPlants:Bra018638.1-P	EnsemblPlantsGene:Bra018638	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593
PANTHER:PTHR10593:SF58	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000253E723	UniProt:M4DQ47	MapMan:15.5.15	:	:	:

Description

AT1G08290 (E=7e-156) | zinc finger (C2H2 type) protein (WIP3)

Coordinates

chrA06:-:2861460..2863557

Molecular Weight (calculated)

38482.9 Da

IEP (calculated)

8.221

GRAVY (calculated)

-0.727

Length

337 amino acids

Sequence
(BLAST)

001: MSLRNLHEMG LGFESPSFIE WLKAPSSSSS SLLFRIKTKD VISRSNHQSM LERSLFSYQP QEPLNTSIRC LPLLNKLMEN ESQALDDIKE EKDDDDVVTL
101: QIGLPNYRRG SSVEDDSDTT SDHHQKSPIK REIIDDEVVM MKKRRKMIID EEMNDLDMEV CGKRFWIPSP AQIHVGPMQF ACTICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTTQPA AILRLPCYCC AEGCKNNINH PRAKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIK SFGNGHSPHP SLSFGGFEED TECVTTE

Best Arabidopsis Sequence Match ( AT1G08290.1 )
(BLAST)

001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE

Arabidopsis Description

WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.