Factsheet for Bra030450.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29624	Canola	nucleus	99.41	99.41
CDY35565	Canola	nucleus	95.29	95.58
Bra018902.1-P	Field mustard	plastid	87.65	88.43
AT1G51220.1	Thale cress	nucleus	84.71	85.46
Bra031239.1-P	Field mustard	nucleus	72.35	68.52
Bra023918.1-P	Field mustard	nucleus	71.47	67.69
Bra003295.1-P	Field mustard	nucleus	47.06	65.04
Solyc11g062060.1.1	Tomato	nucleus	48.53	63.22
GSMUA_Achr9P12600_001	Banana	nucleus	54.71	59.81
GSMUA_Achr3P03850_001	Banana	plastid	53.53	56.35
VIT_06s0004g01870.t01	Wine grape	nucleus	55.29	56.29
Bra007346.1-P	Field mustard	nucleus	50.59	56.03
GSMUA_Achr6P03470_001	Banana	nucleus	51.76	55.17
GSMUA_Achr8P25650_001	Banana	nucleus, plastid	48.53	55.0
GSMUA_Achr4P01560_001	Banana	nucleus	52.06	54.97
GSMUA_AchrUn_...	Banana	plastid	52.35	54.43
KRH10191	Soybean	nucleus, plastid	55.0	54.2
PGSC0003DMT400035408	Potato	nucleus	55.29	54.18
Bra014612.1-P	Field mustard	nucleus, plastid	57.06	53.3
GSMUA_AchrUn_...	Banana	nucleus	53.82	53.2
KRH23146	Soybean	nucleus, plastid	53.53	52.0
GSMUA_Achr3P11050_001	Banana	cytosol, nucleus, plastid	51.18	51.03
KRH29701	Soybean	nucleus	50.59	50.44
KRH24697	Soybean	nucleus, plastid	50.59	50.44
Bra028067.1-P	Field mustard	nucleus	41.47	49.13
TraesCS7D01G397800.1	Wheat	nucleus	52.35	48.11
TraesCS7A01G404400.1	Wheat	nucleus	52.06	48.1
Bra019822.1-P	Field mustard	nucleus	43.53	48.05
TraesCS7B01G304000.1	Wheat	nucleus	52.06	47.84
Zm00001d036812_P001	Maize	nucleus	51.76	45.24
Zm00001d046774_P001	Maize	nucleus	51.76	44.22
Bra018638.1-P	Field mustard	nucleus	43.53	43.92
EER88644	Sorghum	nucleus, plastid	52.06	43.81
Bra031621.1-P	Field mustard	nucleus	41.18	41.54
Os06t0612300-01	Rice	endoplasmic reticulum, vacuole	53.24	40.67
Bra040971.1-P	Field mustard	nucleus	23.82	19.01
Bra002438.1-P	Field mustard	nucleus	20.59	18.62
Bra036750.1-P	Field mustard	nucleus	22.94	15.89
Bra020223.1-P	Field mustard	nucleus	11.47	13.13
Bra020224.1-P	Field mustard	nucleus	11.47	12.96
Bra002437.1-P	Field mustard	nucleus	6.18	8.43

Protein Annotations

EnsemblPlants:Bra030450.1	EnsemblPlants:Bra030450.1-P	EnsemblPlantsGene:Bra030450	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF61	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI0002547AD3	UniProt:M4ENT0	MapMan:15.5.15

Description

AT1G51220 (E=1e-148) | zinc finger (C2H2 type) protein (WIP5)

Coordinates

chrA05:+:11417408..11419766

Molecular Weight (calculated)

38637.5 Da

IEP (calculated)

6.572

GRAVY (calculated)

-0.912

Length

340 amino acids

Sequence
(BLAST)

001: MSNPACSNLF NNGFDNTNFN YSTSLSYIYN SQNSFYHPDT TNPNYMSPTT TTSTFPNSPP LREALPLLSL SPIRHQEQHG QPCFLNTDNT TSSNFHDVTV
101: DLHLGLPNYG DGGSYIAPEA TTEEQDQDHD QEVEVTVESH LHDDDDHHED LYRGHHYWIP TPAQILIGPT QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK
201: GPESLRGTQP TGMLRLPCFC CAPGCKNNID HPRAKPLKDF RTLQTHYKRK HGSRPFACRR CGKAFAVKGD WRTHEKNCGK LWYCSCGSDF KHKRSLKDHV
301: KAFGNGHAPC GIDSFGGDHE DYYEAASDIE QQDDCNNNEC

Best Arabidopsis Sequence Match ( AT1G51220.1 )
(BLAST)

001: MSNPACSNLF NNGCDHNSFN YSTSLSYIYN SHGSYYYSNT TNPNYINHTH TTSTSPNSPP LREALPLLSL SPIRHQEQQD QHYFMDTHQI SSSNFLDDPL
101: VTVDLHLGLP NYGVGESIRS NIAPDATTDE QDQDHDRGVE VTVESHLDDD DDHHGDLHRG HHYWIPTPSQ ILIGPTQFTC PLCFKTFNRY NNMQMHMWGH
201: GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGSK PFACRMCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR
301: SLKDHVKAFG NGHVPCGIDS FGGDHEDYYD AASDIEQ

Arabidopsis Description

WIP5Zinc finger protein WIP5 [Source:UniProtKB/Swiss-Prot;Acc:Q8W031]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.