Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035408 | Potato | nucleus | 93.87 | 70.61 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 75.48 | 58.98 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 66.28 | 55.63 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 68.58 | 55.42 |
| Solyc01g087050.2.1 | Tomato | nucleus | 62.45 | 54.7 |
| GSMUA_AchrUn_... | Banana | plastid | 66.67 | 53.21 |
| KRH10191 | Soybean | nucleus, plastid | 70.11 | 53.04 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 60.92 | 53.0 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 63.6 | 52.04 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 67.82 | 51.91 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 63.98 | 51.86 |
| KRH23146 | Soybean | nucleus, plastid | 68.97 | 51.43 |
| KRH29701 | Soybean | nucleus | 66.28 | 50.73 |
| KRH24697 | Soybean | nucleus, plastid | 66.28 | 50.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 65.9 | 50.0 |
| AT1G51220.1 | Thale cress | nucleus | 63.6 | 49.26 |
| Solyc04g074320.1.1 | Tomato | nucleus | 51.34 | 49.08 |
| Solyc05g009770.1.1 | Tomato | nucleus | 53.26 | 48.6 |
| Bra030450.1-P | Field mustard | nucleus | 63.22 | 48.53 |
| CDY29624 | Canola | nucleus | 62.84 | 48.24 |
| CDY35565 | Canola | nucleus | 62.45 | 48.08 |
| CDY25224 | Canola | nucleus | 61.69 | 47.63 |
| CDY22834 | Canola | nucleus, plastid | 61.69 | 47.63 |
| CDY06390 | Canola | nucleus | 60.92 | 47.6 |
| Bra018902.1-P | Field mustard | plastid | 60.92 | 47.18 |
| CDY57920 | Canola | nucleus | 62.45 | 45.4 |
| Bra023918.1-P | Field mustard | nucleus | 62.45 | 45.4 |
| Bra031239.1-P | Field mustard | nucleus | 62.07 | 45.13 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 63.6 | 45.11 |
| CDY27556 | Canola | nucleus | 61.69 | 44.97 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 63.6 | 44.86 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 63.22 | 44.59 |
| EER88644 | Sorghum | nucleus, plastid | 65.9 | 42.57 |
| Zm00001d036812_P001 | Maize | nucleus | 63.22 | 42.42 |
| Zm00001d046774_P001 | Maize | nucleus | 64.37 | 42.21 |
| AT3G20880.1 | Thale cress | nucleus | 61.69 | 39.08 |
| Solyc03g059270.2.1 | Tomato | nucleus | 50.57 | 38.6 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 65.52 | 38.43 |
| Solyc06g074360.2.1 | Tomato | nucleus | 25.67 | 31.75 |
| Solyc06g065440.1.1 | Tomato | cytosol | 24.52 | 18.23 |
| Solyc04g056320.1.1 | Tomato | nucleus | 23.37 | 16.35 |
| Solyc11g066420.1.1 | Tomato | nucleus, plastid | 23.37 | 15.89 |
| Solyc11g017140.1.1 | Tomato | nucleus | 26.44 | 14.23 |
Protein Annotations
| EnsemblPlants:Solyc11g062060.1.1 | EnsemblPlantsGene:Solyc11g062060.1 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00027693CC | UniProt:K4D918 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:48884663..48887274
Molecular Weight (calculated)
29849.8 Da
IEP (calculated)
6.862
GRAVY (calculated)
-0.943
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDHNNSKE NKDQESFISN NFGDQESVSV ALQLGLPNPS SHDDVISRIN SSTNKEEVQE EEEEVTLANI GYSSTLHKGQ YWIPTPAQIL IGPTQFSCPL
101: CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCFCCSPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK
201: NCGKLWYCTC GSDFKHKRSL KDHIKAFGNG HEAYGIDCLE EEDEPASEIE QDNDHDHDPS N
101: CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCFCCSPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK
201: NCGKLWYCTC GSDFKHKRSL KDHIKAFGNG HEAYGIDCLE EEDEPASEIE QDNDHDHDPS N
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.