Factsheet for Solyc04g056320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008898	Potato	extracellular, nucleus	92.49	93.75
KRG97571	Soybean	nucleus, plastid	48.53	53.55
KRH59322	Soybean	nucleus	43.16	49.24
VIT_07s0141g00020.t01	Wine grape	vacuole	54.42	48.33
KRH43171	Soybean	nucleus, plastid	40.75	47.8
KRH31302	Soybean	nucleus, plastid	46.11	47.25
GSMUA_Achr10P...	Banana	nucleus	43.43	46.15
TraesCS6D01G188100.1	Wheat	nucleus	37.8	38.21
TraesCS6B01G227100.1	Wheat	nucleus	37.8	38.01
TraesCS6A01G201100.1	Wheat	nucleus	37.53	37.94
OQU85186	Sorghum	nucleus	37.0	37.91
Os02t0572900-01	Rice	cytosol, extracellular, nucleus	38.07	36.98
Solyc06g065440.1.1	Tomato	cytosol	34.05	36.18
Zm00001d016911_P001	Maize	nucleus	37.8	33.73
Solyc11g066420.1.1	Tomato	nucleus, plastid	31.37	30.47
Solyc11g017140.1.1	Tomato	nucleus	37.53	28.87
Solyc11g062060.1.1	Tomato	nucleus	16.35	23.37
Solyc01g087050.2.1	Tomato	nucleus	18.23	22.82
Solyc04g074320.1.1	Tomato	nucleus	16.35	22.34
Solyc05g009770.1.1	Tomato	nucleus	16.35	21.33
Solyc03g059270.2.1	Tomato	nucleus	15.55	16.96
Solyc06g074360.2.1	Tomato	nucleus	7.24	12.8

Protein Annotations

EMBL:GQ261244	EnsemblPlants:Solyc04g056320.1.1	EnsemblPlantsGene:Solyc04g056320.1	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000243C642
UniProt:G8Z266	MapMan:15.5.15	:	:	:	:

Description

Hop-interacting protein THI038 [Source:UniProtKB/TrEMBL;Acc:G8Z266]

Coordinates

chr4:+:54066672..54067793

Molecular Weight (calculated)

41650.4 Da

IEP (calculated)

7.177

GRAVY (calculated)

-0.546

Length

373 amino acids

Sequence
(BLAST)

001: MSFTGDLRHL PPNTIGDDPM VPLLNLSAVQ TRMDSLQKFL SDSVNSNTLL GQHQMNMVSD EITSAIHQII VNGAALLSSA QLTNPPPPPP PPPRPSSSAE
101: LKINLKSNHK RSFPEFDRRD FESKVEVLDE EEEDGGDWEI IELDAVELLA EHIHFCDFCG KGFKRDANLR MHMRAHGNQY KTPEALAKPE KCIDSSNSNK
201: RRRFSCPFIG CTRNKSHNKF RPLKSAICVK NHFKRSHCPK MYSCTRCNKK SFSVLADLKS HLKHCGETKW KCSCGTSFSR KDKLFGHMAL FEGHMPAVET
301: APAIENEKDV GVDINGGSGN GLMDIRTGSD NGFLDRLMLD GFESIDSYCF QDLFESSSPN GLNTVPNTTG WFV

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.