Factsheet for Solyc04g074320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18924	Soybean	nucleus	54.58	62.87
VIT_18s0001g05860.t01	Wine grape	nucleus	61.17	61.17
KRH16750	Soybean	nucleus	54.95	60.24
CDY12025	Canola	nucleus	58.24	55.4
Bra028067.1-P	Field mustard	nucleus	57.88	55.05
CDY03134	Canola	nucleus	57.14	54.36
AT1G34790.1	Thale cress	nucleus	58.24	52.48
Solyc11g062060.1.1	Tomato	nucleus	49.08	51.34
PGSC0003DMT400079144	Potato	nucleus	87.18	49.9
Solyc01g087050.2.1	Tomato	nucleus	52.75	48.32
Solyc05g009770.1.1	Tomato	nucleus	50.55	48.25
Solyc03g059270.2.1	Tomato	nucleus	39.93	31.87
Solyc06g074360.2.1	Tomato	nucleus	21.25	27.49
Solyc06g065440.1.1	Tomato	cytosol	24.18	18.8
Solyc11g066420.1.1	Tomato	nucleus, plastid	24.54	17.45
Solyc04g056320.1.1	Tomato	nucleus	22.34	16.35
Solyc11g017140.1.1	Tomato	nucleus	24.54	13.81

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009813	InterPro:IPR013087	UniProt:K4BTX0	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF69	SMART:SM00355	SUPFAM:SSF57667	EnsemblPlantsGene:Solyc04g074320.1	EnsemblPlants:Solyc04g074320.1.1	InterPro:TT1-like
UniParc:UPI0002765631	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

Protein TRANSPARENT TESTA 1 [Source:Projected from Arabidopsis thaliana (AT1G34790) UniProtKB/Swiss-Prot;Acc:Q8VWG3]

Coordinates

chr4:+:60327018..60327988

Molecular Weight (calculated)

31124.4 Da

IEP (calculated)

8.666

GRAVY (calculated)

-0.815

Length

273 amino acids

Sequence
(BLAST)

001: MEHSYFASSS RSIENQIEPF DFFADKTQNA FEFLSLSQPS NQNIEKMSNY EENPNWNNIE DDVTVALHIG LPNSSNNNNN IPIDHNKSDG NIIGATTQYW
101: IPTPSQILVG FTHFSCHICH KTFNRYNNLQ MHMWGHGSQY RKGPESLKGT QPRAMLGIPC YCCEEGCKNN INHSRAKPLK DFRTLQTHYK RKHGTKRFAC
201: RKCGKCLAVK GDWRTHEKNC GKRWLCVCGS DFKHKRSLKD HIASFGEGHG ASSPANNNSF DGVEVQRSAN FYV

Best Arabidopsis Sequence Match ( AT1G34790.1 )
(BLAST)

001: MESPPLYEIS SSSSSEKPRH HFQSLDLFPN LNQNSCINNT LIEPLPLIDR INLNSNLDLN PNPLYAEEGE QEEEEEEEED REVDVDLHIG LPGFGKPSND
101: AKQLKKRNGK EIATYDAGKG IENELSGKAY WIPAPEQILI GFTHFSCHVC FKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCRN
201: HIDHPRSKPL KDFRTLQTHY KRKHGHKPFS CRLCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGSGH GPYPTGLFEE QASNSSVSET
301: LFF

Arabidopsis Description

TT1Protein TRANSPARENT TESTA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWG3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.