Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g006420.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57670.1 | Solyc05g006420.2.1 | AT1G10470.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400077822 | Potato | nucleus | 59.06 | 63.52 |
| Solyc11g062060.1.1 | Tomato | nucleus | 38.6 | 50.57 |
| CDY57608 | Canola | nucleus | 35.38 | 50.42 |
| Bra003295.1-P | Field mustard | nucleus | 35.67 | 49.59 |
| CDX67704 | Canola | nucleus | 35.67 | 49.59 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 48.54 | 48.12 |
| Bra007346.1-P | Field mustard | nucleus | 41.52 | 46.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.86 | 45.87 |
| Solyc01g087050.2.1 | Tomato | nucleus | 38.6 | 44.3 |
| CDX72006 | Canola | nucleus | 48.25 | 44.24 |
| CDY06083 | Canola | nucleus | 48.25 | 44.12 |
| KRH71956 | Soybean | nucleus, plastid | 47.66 | 43.94 |
| AT3G57670.1 | Thale cress | nucleus | 48.54 | 43.34 |
| KRH33045 | Soybean | nucleus, plastid | 47.08 | 41.71 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 43.57 | 41.27 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 42.98 | 39.95 |
| Solyc04g074320.1.1 | Tomato | nucleus | 31.87 | 39.93 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 42.98 | 39.73 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 42.69 | 39.46 |
| Zm00001d036812_P001 | Maize | nucleus | 43.86 | 38.56 |
| EER88644 | Sorghum | nucleus, plastid | 44.74 | 37.87 |
| Zm00001d046774_P001 | Maize | nucleus | 43.86 | 37.69 |
| Solyc05g009770.1.1 | Tomato | nucleus | 31.29 | 37.41 |
| Solyc06g074360.2.1 | Tomato | nucleus | 21.64 | 35.07 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 43.57 | 33.48 |
| Solyc04g056320.1.1 | Tomato | nucleus | 16.96 | 15.55 |
| Solyc06g065440.1.1 | Tomato | cytosol | 15.5 | 15.1 |
| Solyc11g066420.1.1 | Tomato | nucleus, plastid | 16.08 | 14.32 |
| Solyc11g017140.1.1 | Tomato | nucleus | 18.13 | 12.78 |
Protein Annotations
| EnsemblPlants:Solyc03g059270.2.1 | EnsemblPlantsGene:Solyc03g059270.2 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 | PFscan:PS50157 | ScanProsite:PS00028 |
| SEG:seg | UniParc:UPI0002768EC9 | UniProt:K4BGX4 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr3:+:28242569..28244769
Molecular Weight (calculated)
38672.2 Da
IEP (calculated)
6.398
GRAVY (calculated)
-0.760
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDPNFYSQE EEWLKLNNPN IPSPPPNNNN YYYETPPLKE ALPLLSLLSP IKHDDDDDDE GCCSISDLDK KGRRVEHMDD NSCTKDDDED VTVALHIGLP
101: NPSSADLASI NKDDVSIPMA NMINTTSTSS SRQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTGI KCGKAFAVRG
201: DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGQGHGP YGIHSFDDDD DDPASEVEQD NPPQHIDIDH TRSSTTALSH KQNHMIWALN MGNTARKVWG
301: KHLHQKCNIC VGLNVQPKTT YLIFTITIYT NINNTLNNLF SS
101: NPSSADLASI NKDDVSIPMA NMINTTSTSS SRQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTGI KCGKAFAVRG
201: DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGQGHGP YGIHSFDDDD DDPASEVEQD NPPQHIDIDH TRSSTTALSH KQNHMIWALN MGNTARKVWG
301: KHLHQKCNIC VGLNVQPKTT YLIFTITIYT NINNTLNNLF SS
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.